STRINGSTRING
RPE_3065 RPE_3065 RPE_4867 RPE_4867 RPE_4752 RPE_4752 RPE_4751 RPE_4751 RPE_4739 RPE_4739 RPE_4649 RPE_4649 RPE_4648 RPE_4648 RPE_4542 RPE_4542 RPE_4525 RPE_4525 RPE_4458 RPE_4458 RPE_3866 RPE_3866 RPE_3865 RPE_3865 RPE_3525 RPE_3525 RPE_2913 RPE_2913 RPE_2635 RPE_2635 RPE_2535 RPE_2535 nuoK-2 nuoK-2 nuoI2 nuoI2 RPE_2529 RPE_2529 RPE_2527 RPE_2527 RPE_2525 RPE_2525 nuoB2 nuoB2 RPE_2228 RPE_2228 RPE_1855 RPE_1855 RPE_1740 RPE_1740 RPE_1721 RPE_1721 nuoI1 nuoI1 RPE_1715 RPE_1715 RPE_1714 RPE_1714 RPE_1713 RPE_1713 nuoB1 nuoB1 RPE_1462 RPE_1462 RPE_1259 RPE_1259 RPE_1258 RPE_1258 RPE_1071 RPE_1071 RPE_1047 RPE_1047 RPE_0949 RPE_0949 RPE_0890 RPE_0890 RPE_0852 RPE_0852 RPE_0622 RPE_0622 RPE_0621 RPE_0621 RPE_0603 RPE_0603 RPE_0514 RPE_0514 RPE_0512 RPE_0512 RPE_0510 RPE_0510 RPE_0505 RPE_0505 RPE_0018 RPE_0018 RPE_0017 RPE_0017 RPE_0015 RPE_0015
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_3065KEGG: rpa:RPA2069 hypothetical protein. (336 aa)
RPE_4867KEGG: rpd:RPD_2376 cytochrome c family protein. (193 aa)
RPE_4752Cytochrome-c oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (546 aa)
RPE_4751Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (283 aa)
RPE_4739PFAM: peptidase U32; KEGG: rpc:RPC_4778 peptidase U32. (306 aa)
RPE_4649PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rpc:RPC_4647 NADH dehydrogenase (ubiquinone), 24 kDa subunit. (160 aa)
RPE_4648PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4646 NADH dehydrogenase (quinone). (518 aa)
RPE_4542PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_4473 4Fe-4S ferredoxin, iron-sulfur binding. (64 aa)
RPE_4525PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4612 ferredoxin 2[4Fe-4S] III, FdxB. (103 aa)
RPE_4458KEGG: nha:Nham_2708 hypothetical protein. (610 aa)
RPE_3866PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_3850 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family. (841 aa)
RPE_3865PFAM: cytochrome c oxidase, subunit II; KEGG: rpc:RPC_3849 cytochrome c oxidase, subunit II. (560 aa)
RPE_3525PFAM: Pyrrolo-quinoline quinone; KEGG: rpb:RPB_2355 pyrrolo-quinoline quinone. (726 aa)
RPE_2913PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region. (111 aa)
RPE_2635PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpc:RPC_2888 NADH:ubiquinone oxidoreductase 17.2 kD subunit. (136 aa)
RPE_2535KEGG: rpc:RPC_2416 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (505 aa)
nuoK-2NADH-ubiquinone oxidoreductase, chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
nuoI2NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
RPE_2529NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (691 aa)
RPE_2527NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (441 aa)
RPE_2525KEGG: rpc:RPC_2406 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit. (249 aa)
nuoB2NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (200 aa)
RPE_2228TIGRFAM: precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rpc:RPC_1893 precorrin 3B synthase CobZ. (460 aa)
RPE_1855KEGG: rpc:RPC_1763 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK. (163 aa)
RPE_1740PFAM: cytochrome c, class I; KEGG: rpc:RPC_4040 hypothetical protein. (117 aa)
RPE_1721KEGG: rpc:RPC_4060 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (480 aa)
nuoI1NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (173 aa)
RPE_1715TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4066 NADH-quinone oxidoreductase, chain G. (871 aa)
RPE_1714PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4067 NADH dehydrogenase (quinone). (428 aa)
RPE_1713PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rpc:RPC_4068 NADH dehydrogenase (ubiquinone), 24 kDa subunit. (157 aa)
nuoB1NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (205 aa)
RPE_1462KEGG: rpc:RPC_1441 putative diheme cytochrome c-553. (365 aa)
RPE_1259Sulfite reductase (NADPH) alpha subunit; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; KEGG: rpb:RPB_1753 oxidoreductase, FAD/NAD(P)-binding. (538 aa)
RPE_1258Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_1752 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (897 aa)
RPE_1071KEGG: rpc:RPC_1153 hypothetical protein. (153 aa)
RPE_1047Cytochrome c553-like protein; KEGG: rpd:RPD_0618 cytochrome c, class I. (232 aa)
RPE_0949Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (691 aa)
RPE_0890KEGG: rpc:RPC_4698 putative cytochrome c552 precursor. (120 aa)
RPE_0852Hypothetical protein; KEGG: bja:blr6214 putative cytochrome c protein. (190 aa)
RPE_0622KEGG: bja:blr3214 nitric oxide reductase subunit C. (150 aa)
RPE_0621PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. (448 aa)
RPE_0603PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA0662 ferredoxin. (81 aa)
RPE_0514KEGG: rpa:RPA0216 succinate dehydrogenase iron-sulfur protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
RPE_0512KEGG: rpc:RPC_0070 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (607 aa)
RPE_0510PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0327 succinate dehydrogenase, cytochrome b subunit. (132 aa)
RPE_0505PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: rpc:RPC_0437 NAD-dependent epimerase/dehydratase. (328 aa)
RPE_0018TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_0015 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. (548 aa)
RPE_0017TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II. (244 aa)
RPE_0015Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (293 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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