STRINGSTRING
RPE_0562 RPE_0562 RPE_0560 RPE_0560 priA priA secA1 secA1 RPE_0127 RPE_0127 RPE_4912 RPE_4912 RPE_4818 RPE_4818 secA2 secA2 uvrB uvrB RPE_4047 RPE_4047 RPE_4042 RPE_4042 RPE_3742 RPE_3742 RPE_2959 RPE_2959 mfd mfd RPE_2788 RPE_2788 RPE_2500 RPE_2500 RPE_2448 RPE_2448 RPE_2167 RPE_2167 RPE_2164 RPE_2164 RPE_0835 RPE_0835 RPE_0730 RPE_0730
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0562PFAM: type III restriction enzyme, res subunit; KEGG: tbd:Tbd_0937 hypothetical protein. (894 aa)
RPE_0560PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: xcb:XC_0536 helicase. (963 aa)
priAReplication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (732 aa)
secA1Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (947 aa)
RPE_0127PFAM: helicase domain protein; KEGG: rpc:RPC_0545 helicase-like. (1116 aa)
RPE_4912TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_4412 ATP-dependent DNA helicase RecQ. (617 aa)
RPE_4818KEGG: rpb:RPB_0505 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD/DEAH box helicase domain protein. (871 aa)
secA2Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (813 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (1023 aa)
RPE_4047PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: psb:Psyr_5115 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal. (1231 aa)
RPE_4042KEGG: rpc:RPC_3919 probably methylase/helicase. (1459 aa)
RPE_3742PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_3703 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (490 aa)
RPE_2959PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2833 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (517 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1179 aa)
RPE_2788PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2608 DEAD/DEAH box helicase-like. (699 aa)
RPE_2500PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase. (1006 aa)
RPE_2448PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpb:RPB_2543 DEAD/DEAH box helicase. (750 aa)
RPE_2167PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like. (2056 aa)
RPE_2164PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_0063 type III restriction enzyme, res subunit. (953 aa)
RPE_0835PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_3218 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (694 aa)
RPE_0730PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; KEGG: rpc:RPC_0747 DEAD/DEAH box helicase-like. (804 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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