STRINGSTRING
RPE_0093 RPE_0093 RPE_0145 RPE_0145 RPE_0203 RPE_0203 RPE_0589 RPE_0589 RPE_1656 RPE_1656 RPE_2005 RPE_2005 murB murB RPE_2140 RPE_2140 RPE_2886 RPE_2886 RPE_3215 RPE_3215 RPE_4381 RPE_4381 RPE_4570 RPE_4570 RPE_4693 RPE_4693 RPE_4694 RPE_4694
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0093PFAM: sodium/hydrogen exchanger; KEGG: rpc:RPC_0580 sodium/hydrogen exchanger. (599 aa)
RPE_0145PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpa:RPA0502 probable HlyC/CorC family of transporters with 2 CBS domains. (447 aa)
RPE_0203PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein. (370 aa)
RPE_05894-hydroxybenzoyl-CoA reductase beta subunit; PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpd:RPD_1523 molybdopterin dehydrogenase, FAD-binding. (328 aa)
RPE_1656PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_1632 molybdopterin dehydrogenase, FAD-binding. (280 aa)
RPE_2005PFAM: FAD linked oxidase domain protein; KEGG: rpd:RPD_2071 FAD linked oxidase-like. (460 aa)
murBUDP-N-acetylmuramate dehydrogenase; Cell wall formation. (321 aa)
RPE_2140PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_3276 FAD linked oxidase-like. (472 aa)
RPE_2886PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpb:RPB_2711 hypothetical protein. (440 aa)
RPE_3215PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: eba:ebA2062 medium FAD-binding subunit of molybdenum enzyme. (288 aa)
RPE_4381PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_4322 FAD linked oxidase-like. (470 aa)
RPE_4570Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_4530 carbon-monoxide dehydrogenase. (266 aa)
RPE_4693PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_4735 FAD linked oxidase-like. (413 aa)
RPE_4694PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_4736 FAD linked oxidase-like. (497 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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