STRINGSTRING
RPE_3214 RPE_3214 RPE_1476 RPE_1476 RPE_2529 RPE_2529 RPE_1655 RPE_1655 RPE_1715 RPE_1715 RPE_1938 RPE_1938 RPE_4568 RPE_4568 RPE_4647 RPE_4647 RPE_0992 RPE_0992
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_3214PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme. (156 aa)
RPE_1476PFAM: ferredoxin; KEGG: rpc:RPC_1457 ferredoxin. (106 aa)
RPE_2529NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (691 aa)
RPE_1655PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_1631 (2Fe-2S)-binding. (161 aa)
RPE_1715TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4066 NADH-quinone oxidoreductase, chain G. (871 aa)
RPE_1938PFAM: ferredoxin; KEGG: rpc:RPC_1840 ferredoxin. (302 aa)
RPE_4568PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_4528 (2Fe-2S)-binding. (156 aa)
RPE_4647TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4645 formate dehydrogenase, alpha subunit. (948 aa)
RPE_0992TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rpc:RPC_0687 phenylacetate-CoA oxygenase/reductase, PaaK subunit. (360 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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