STRINGSTRING
RPE_0589 RPE_0589 RPE_0590 RPE_0590 RPE_0591 RPE_0591 RPE_0592 RPE_0592 RPE_0604 RPE_0604 RPE_0749 RPE_0749 RPE_0750 RPE_0750 RPE_0751 RPE_0751 RPE_0752 RPE_0752 RPE_1253 RPE_1253 RPE_1836 RPE_1836 RPE_2386 RPE_2386 RPE_3227 RPE_3227 RPE_3229 RPE_3229 acyP acyP RPE_3704 RPE_3704 RPE_4305 RPE_4305 ubiX ubiX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_05894-hydroxybenzoyl-CoA reductase beta subunit; PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpd:RPD_1523 molybdopterin dehydrogenase, FAD-binding. (328 aa)
RPE_05904-hydroxybenzoyl-CoA reductase alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_1014 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding. (778 aa)
RPE_05914-hydroxybenzoyl-CoA reductase gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_1525 (2Fe-2S)-binding. (163 aa)
RPE_0592TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1016 benzoate-CoA ligase family. (521 aa)
RPE_0604TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1025 benzoate-CoA ligase family. (523 aa)
RPE_0749PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2. (304 aa)
RPE_0750Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rpd:RPD_0983 protocatechuate 4,5-dioxygenase. (129 aa)
RPE_0751Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rpa:RPA4702 protocatechuate 4,5-dioxygenase, beta chain. (284 aa)
RPE_0752PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (318 aa)
RPE_1253PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpc:RPC_1191 thiamine pyrophosphate enzyme-like TPP binding region; Belongs to the TPP enzyme family. (545 aa)
RPE_1836PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1738 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
RPE_2386PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA3447 enoyl-CoA hydratase. (361 aa)
RPE_3227PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mlr0619 probable acid-CoA ligase. (554 aa)
RPE_3229PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding; KEGG: bja:blr3436 hypothetical protein. (773 aa)
acyPPFAM: acylphosphatase; KEGG: rpc:RPC_3350 acylphosphatase. (96 aa)
RPE_3704PFAM: Amidase; KEGG: rpc:RPC_3666 amidase; Belongs to the amidase family. (466 aa)
RPE_4305PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: bja:blr7248 benzoylformate decarboxylase; Belongs to the TPP enzyme family. (560 aa)
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (200 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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