STRINGSTRING
RPE_0167 RPE_0167 RPE_0168 RPE_0168 RPE_0222 RPE_0222 RPE_0226 RPE_0226 RPE_0510 RPE_0510 RPE_0511 RPE_0511 RPE_0512 RPE_0512 RPE_0514 RPE_0514 RPE_0601 RPE_0601 RPE_0602 RPE_0602 RPE_0673 RPE_0673 RPE_0674 RPE_0674 RPE_0766 RPE_0766 RPE_0804 RPE_0804 RPE_0983 RPE_0983 RPE_0984 RPE_0984 RPE_1701 RPE_1701 RPE_1731 RPE_1731 RPE_1773 RPE_1773 RPE_1801 RPE_1801 RPE_1836 RPE_1836 RPE_2004 RPE_2004 RPE_2187 RPE_2187 RPE_2189 RPE_2189 RPE_2372 RPE_2372 RPE_2386 RPE_2386 RPE_2910 RPE_2910 RPE_2940 RPE_2940 RPE_3101 RPE_3101 RPE_3219 RPE_3219 RPE_3692 RPE_3692 RPE_3778 RPE_3778 RPE_3780 RPE_3780 RPE_3827 RPE_3827 RPE_4077 RPE_4077 RPE_4078 RPE_4078 RPE_4118 RPE_4118 RPE_4198 RPE_4198 RPE_4300 RPE_4300 RPE_4847 RPE_4847
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0167TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rpc:RPC_0505 acetoacetyl-CoA reductase. (241 aa)
RPE_0168KEGG: rpc:RPC_0504 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
RPE_0222KEGG: rpd:RPD_0255 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (497 aa)
RPE_0226TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpc:RPC_0356 polyhydroxyalkanoate depolymerase, intracellular. (442 aa)
RPE_0510PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0327 succinate dehydrogenase, cytochrome b subunit. (132 aa)
RPE_0511PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0326 succinate dehydrogenase, cytochrome b subunit. (137 aa)
RPE_0512KEGG: rpc:RPC_0070 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (607 aa)
RPE_0514KEGG: rpa:RPA0216 succinate dehydrogenase iron-sulfur protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
RPE_0601TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpd:RPD_1531 pyruvate/2-ketoisovalerate 2-oxoacid:acceptor oxidoreductase, beta subunit. (279 aa)
RPE_0602PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: rpd:RPD_1532 pyruvate flavodoxin/ferredoxin oxidoreductase-like. (577 aa)
RPE_0673KEGG: rpb:RPB_4605 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
RPE_0674PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase. (738 aa)
RPE_0766PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like. (1689 aa)
RPE_0804PFAM: acetyl-CoA hydrolase/transferase; KEGG: rpd:RPD_0322 acetyl-CoA hydrolase. (519 aa)
RPE_09832-oxoglutarate ferredoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpc:RPC_0696 thiamine pyrophosphate enzyme-like TPP-binding. (279 aa)
RPE_09842-oxoglutarate ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0695 pyruvate flavodoxin/ferredoxin oxidoreductase-like. (386 aa)
RPE_1701KEGG: rpd:RPD_1858 putative acetyl-CoA acetyltransferase. (502 aa)
RPE_1731PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_4048 poly-beta-hydroxybutyrate polymerase-like. (597 aa)
RPE_1773TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4002 3-hydroxybutyrate dehydrogenase. (262 aa)
RPE_1801Acetolactate synthase, large subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_3594 thiamine pyrophosphate enzyme-like TPP-binding; Belongs to the TPP enzyme family. (540 aa)
RPE_1836PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1738 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
RPE_2004PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_2070 thiamine pyrophosphate enzyme-like TPP-binding. (518 aa)
RPE_2187TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpa:RPA2031 acetolactate synthase (large subunit). (592 aa)
RPE_2189TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rpc:RPC_3253 acetolactate synthase, small subunit. (180 aa)
RPE_2372PFAM: Thiolase; KEGG: rpc:RPC_3100 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (388 aa)
RPE_2386PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA3447 enoyl-CoA hydratase. (361 aa)
RPE_2910hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: rpc:RPC_2780 pyruvate carboxyltransferase. (301 aa)
RPE_2940TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_2819 poly(R)-hydroxyalkanoic acid synthase, class I. (600 aa)
RPE_3101KEGG: rpc:RPC_2980 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL. (760 aa)
RPE_3219PFAM: Thiolase; KEGG: eba:ebA2049 putative beta-oxoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
RPE_3692PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: rpc:RPC_4481 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. (904 aa)
RPE_3778KEGG: rpb:RPB_1748 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
RPE_3780PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpb:RPB_1746 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (694 aa)
RPE_3827KEGG: rpc:RPC_2194 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
RPE_4077KEGG: rpa:RPA4155 3-oxoadipate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase. (216 aa)
RPE_4078KEGG: rpc:RPC_3950 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase. (245 aa)
RPE_4118PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3994 MaoC-like dehydratase. (148 aa)
RPE_4198KEGG: rpd:RPD_3991 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; Belongs to the thiolase-like superfamily. Thiolase family. (417 aa)
RPE_4300PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpc:RPC_4260 thiamine pyrophosphate enzyme-like TPP-binding. (512 aa)
RPE_4847PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpc:RPC_4878 3-hydroxybutyryl-CoA dehydrogenase. (293 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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