STRINGSTRING
RPE_0341 RPE_0341 RPE_0621 RPE_0621 RPE_0622 RPE_0622 RPE_0682 RPE_0682 RPE_0683 RPE_0683 RPE_0718 RPE_0718 RPE_0757 RPE_0757 RPE_0767 RPE_0767 RPE_1258 RPE_1258 RPE_1260 RPE_1260 RPE_1261 RPE_1261 RPE_1263 RPE_1263 RPE_1264 RPE_1264 RPE_1265 RPE_1265 RPE_2505 RPE_2505 nosZ nosZ RPE_3188 RPE_3188 RPE_3190 RPE_3190 RPE_3363 RPE_3363 RPE_3881 RPE_3881 RPE_3882 RPE_3882 RPE_3883 RPE_3883 RPE_4071 RPE_4071 RPE_4531 RPE_4531 RPE_4532 RPE_4532 nifH-2 nifH-2 RPE_4597 RPE_4597 cynS cynS RPE_4636 RPE_4636 RPE_4637 RPE_4637 RPE_4638 RPE_4638
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0341Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (216 aa)
RPE_0621PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. (448 aa)
RPE_0622KEGG: bja:blr3214 nitric oxide reductase subunit C. (150 aa)
RPE_0682TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_0760 glutamate synthases, NADH/NADPH, small subunit. (484 aa)
RPE_0683PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin). (1589 aa)
RPE_0718Carbonate dehydratase; PFAM: carbonic anhydrase; KEGG: rpc:RPC_0758 carbonate dehydratase. (253 aa)
RPE_0757PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpd:RPD_0976 2-nitropropane dioxygenase, NPD. (322 aa)
RPE_0767Glutamate synthase (NADPH) small chain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rpa:RPA4722 possible glutamate synthase, small subunit. (945 aa)
RPE_1258Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_1752 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (897 aa)
RPE_1260TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpa:RPA3710 possible ferredoxin-nitrite reductase. (586 aa)
RPE_1261Assimilatory nitrate reductase (NADH) beta subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: rpb:RPB_1755 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (409 aa)
RPE_1263KEGG: rpb:RPB_1758 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase. (264 aa)
RPE_1264TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1759 nitrate transport permease. (299 aa)
RPE_1265ABC-type nitrate transport system periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_1760 twin-arginine translocation pathway signal. (435 aa)
RPE_2505KEGG: rpc:RPC_2386 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp. (469 aa)
nosZNitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. (648 aa)
RPE_3188PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpa:RPA2617 possible vanadium nitrogenase associated protein VnfN (U51863). (417 aa)
RPE_3190Nitrogenase; PFAM: NifH/frxC-family protein; KEGG: rpa:RPA2615 putative nitrogenase iron protein (nitrogenase component II) (nitrogenase reductase); Belongs to the NifH/BchL/ChlL family. (291 aa)
RPE_3363PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpa:RPA3112 2-nitropropane dioxygenase. (359 aa)
RPE_3881Nitrogenase; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpc:RPC_4681 nitrogenase; Belongs to the NifD/NifK/NifE/NifN family. (462 aa)
RPE_3882Nitrogenase; PFAM: Vanadium/alternative nitrogenase delta subunit; KEGG: rpc:RPC_4682 nitrogenase. (142 aa)
RPE_3883KEGG: rpc:RPC_4683 nitrogenase alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1. (524 aa)
RPE_4071Nitrite reductase, copper-containing; KEGG: bja:blr7089 respiratory nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3. (366 aa)
RPE_4531Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (518 aa)
RPE_4532KEGG: rpc:RPC_4462 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1. (487 aa)
nifH-2Nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (299 aa)
RPE_4597Formamidase; PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase. (409 aa)
cynSCyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. (162 aa)
RPE_4636PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_2056 ABC transporter related. (306 aa)
RPE_4637TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_2055 nitrate transport permease. (279 aa)
RPE_4638ABC-type nitrate transport system periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_2054 twin-arginine translocation pathway signal. (462 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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