(14 nodes) 2Fe-2S ferredoxin-type iron-sulfur binding domain network (Rhodopseudomonas palustris BisB18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPC_1840	Ferredoxin. (302 aa)
	RPC_0068	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
	RPC_0687	Phenylacetate-CoA oxygenase/reductase, PaaK subunit. (360 aa)
	RPC_0850	(2Fe-2S)-binding. (173 aa)
	RPC_1015	4-hydroxybenzoyl-CoA reductase gamma subunit. (163 aa)
	RPC_1133	Twin-arginine translocation pathway signal. (218 aa)
	RPC_1457	Ferredoxin. (106 aa)
	RPC_1631	(2Fe-2S)-binding. (161 aa)
	RPC_2410	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (692 aa)
	RPC_3465	(2Fe-2S)-binding. (154 aa)
	RPC_4066	NADH-quinone oxidoreductase, chain G. (871 aa)
	RPC_4528	(2Fe-2S)-binding. (161 aa)
	RPC_4638	(2Fe-2S)-binding. (179 aa)
	RPC_4645	Formate dehydrogenase, alpha subunit. (948 aa)

Your Current Organism:

Rhodopseudomonas palustris BisB18

NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPC_0068	RPC_0687	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	Phenylacetate-CoA oxygenase/reductase, PaaK subunit.	0.418
RPC_0068	RPC_2410	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.892
RPC_0068	RPC_4066	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	NADH-quinone oxidoreductase, chain G.	0.874
RPC_0687	RPC_0068	Phenylacetate-CoA oxygenase/reductase, PaaK subunit.	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.418
RPC_0687	RPC_2410	Phenylacetate-CoA oxygenase/reductase, PaaK subunit.	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.479
RPC_0687	RPC_4066	Phenylacetate-CoA oxygenase/reductase, PaaK subunit.	NADH-quinone oxidoreductase, chain G.	0.479
RPC_1133	RPC_4638	Twin-arginine translocation pathway signal.	(2Fe-2S)-binding.	0.903
RPC_1457	RPC_2410	Ferredoxin.	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.479
RPC_1457	RPC_4066	Ferredoxin.	NADH-quinone oxidoreductase, chain G.	0.479
RPC_1840	RPC_2410	Ferredoxin.	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.509
RPC_1840	RPC_4066	Ferredoxin.	NADH-quinone oxidoreductase, chain G.	0.509
RPC_2410	RPC_0068	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.892
RPC_2410	RPC_0687	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Phenylacetate-CoA oxygenase/reductase, PaaK subunit.	0.479
RPC_2410	RPC_1457	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Ferredoxin.	0.479
RPC_2410	RPC_1840	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Ferredoxin.	0.509
RPC_2410	RPC_4066	NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	NADH-quinone oxidoreductase, chain G.	0.906
RPC_4066	RPC_0068	NADH-quinone oxidoreductase, chain G.	Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.874
RPC_4066	RPC_0687	NADH-quinone oxidoreductase, chain G.	Phenylacetate-CoA oxygenase/reductase, PaaK subunit.	0.479
RPC_4066	RPC_1457	NADH-quinone oxidoreductase, chain G.	Ferredoxin.	0.479
RPC_4066	RPC_1840	NADH-quinone oxidoreductase, chain G.	Ferredoxin.	0.509