(8 nodes) RNA polymerase sigma factor 70, region 4 type 2 network (Rhodopseudomonas palustris BisB18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPC_4030	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
	RPC_2994	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
	RPC_2905	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
	RPC_1978	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	RPC_1740	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
	RPC_0093	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
	RPC_0865	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (227 aa)
	RPC_4228	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)

Your Current Organism:

Rhodopseudomonas palustris BisB18

NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPC_0093	RPC_1740	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.410
RPC_0093	RPC_2994	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.407
RPC_0093	RPC_4030	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	0.680
RPC_1740	RPC_0093	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.410
RPC_1978	RPC_2905	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.644
RPC_2905	RPC_1978	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.644
RPC_2994	RPC_0093	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.407
RPC_4030	RPC_0093	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.680
RPC_4030	RPC_4228	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.565
RPC_4228	RPC_4030	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	0.565