(11 nodes) RNA polymerase sigma factor, region 3/4-like network (Rhodopseudomonas palustris BisB18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpoD	Sigma 70 (RpoD); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (702 aa)
	RPC_0865	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (227 aa)
	rpoH	Sigma 32 (RpoH); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (299 aa)
	RPC_2905	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
	RPC_0093	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
	RPC_2994	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
	RPC_3588	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
	RPC_4030	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
	RPC_4228	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
	RPC_1740	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
	RPC_1978	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)

Your Current Organism:

Rhodopseudomonas palustris BisB18

NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPC_0093	RPC_1740	RPC_0093	RPC_1740	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.410
RPC_0093	RPC_2994	RPC_0093	RPC_2994	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.407
RPC_0093	RPC_4030	RPC_0093	RPC_4030	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	0.680
RPC_0865	RPC_3588	RPC_0865	RPC_3588	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.503
RPC_1740	RPC_0093	RPC_1740	RPC_0093	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.410
RPC_1978	RPC_2905	RPC_1978	RPC_2905	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.644
RPC_1978	RPC_3588	RPC_1978	RPC_3588	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.422
RPC_2905	RPC_1978	RPC_2905	RPC_1978	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.644
RPC_2994	RPC_0093	RPC_2994	RPC_0093	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.407
RPC_3588	RPC_0865	RPC_3588	RPC_0865	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.503
RPC_3588	RPC_1978	RPC_3588	RPC_1978	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.422
RPC_4030	RPC_0093	RPC_4030	RPC_0093	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.680
RPC_4030	RPC_4228	RPC_4030	RPC_4228	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	0.565
RPC_4228	RPC_4030	RPC_4228	RPC_4030	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	0.565
rpoD	rpoH	RPC_0971	RPC_0605	Sigma 70 (RpoD); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Sigma 32 (RpoH); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.461
rpoH	rpoD	RPC_0605	RPC_0971	Sigma 32 (RpoH); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	Sigma 70 (RpoD); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.461