(18 nodes) Mixed, incl. Bordetella uptake gene, and Protein of unknown function DUF1468 network (Rhodopseudomonas palustris BisB5)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPD_0330	Putative ammonia monooxygenase. (359 aa)
	RPD_0670	Uncharacterized protein UPF0065. (329 aa)
	RPD_1498	Uncharacterized protein UPF0065. (351 aa)
	RPD_1882	Conserved hypothetical protein. (228 aa)
	RPD_2024	Protein of unknown function DUF112, transmembrane. (510 aa)
	RPD_2025	Conserved hypothetical protein. (165 aa)
	RPD_2026	Uncharacterized protein UPF0065. (337 aa)
	RPD_3004	Major facilitator superfamily MFS_1. (421 aa)
	RPD_3006	Conserved hypothetical protein. (179 aa)
	RPD_3007	Conserved hypothetical protein. (217 aa)
	RPD_3009	NnrU. (194 aa)
	RPD_3010	Twin-arginine translocation pathway signal. (334 aa)
	RPD_3355	Uncharacterized protein UPF0065. (337 aa)
	RPD_3356	Uncharacterized protein UPF0065. (328 aa)
	RPD_3357	Protein of unknown function DUF112, transmembrane. (504 aa)
	RPD_3358	Protein of unknown function DUF1468. (166 aa)
	RPD_3901	Uncharacterized protein UPF0065. (325 aa)
	RPD_4229	Twin-arginine translocation pathway signal. (335 aa)

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPD_0330	RPD_2024	Putative ammonia monooxygenase.	Protein of unknown function DUF112, transmembrane.	0.463
RPD_0330	RPD_2025	Putative ammonia monooxygenase.	Conserved hypothetical protein.	0.464
RPD_0330	RPD_3357	Putative ammonia monooxygenase.	Protein of unknown function DUF112, transmembrane.	0.458
RPD_0330	RPD_3358	Putative ammonia monooxygenase.	Protein of unknown function DUF1468.	0.553
RPD_0670	RPD_2024	Uncharacterized protein UPF0065.	Protein of unknown function DUF112, transmembrane.	0.873
RPD_0670	RPD_2025	Uncharacterized protein UPF0065.	Conserved hypothetical protein.	0.574
RPD_0670	RPD_3357	Uncharacterized protein UPF0065.	Protein of unknown function DUF112, transmembrane.	0.874
RPD_0670	RPD_3358	Uncharacterized protein UPF0065.	Protein of unknown function DUF1468.	0.709
RPD_1498	RPD_2024	Uncharacterized protein UPF0065.	Protein of unknown function DUF112, transmembrane.	0.874
RPD_1498	RPD_2025	Uncharacterized protein UPF0065.	Conserved hypothetical protein.	0.619
RPD_1498	RPD_2026	Uncharacterized protein UPF0065.	Uncharacterized protein UPF0065.	0.771
RPD_1498	RPD_3357	Uncharacterized protein UPF0065.	Protein of unknown function DUF112, transmembrane.	0.874
RPD_1498	RPD_3358	Uncharacterized protein UPF0065.	Protein of unknown function DUF1468.	0.795
RPD_2024	RPD_0330	Protein of unknown function DUF112, transmembrane.	Putative ammonia monooxygenase.	0.463
RPD_2024	RPD_0670	Protein of unknown function DUF112, transmembrane.	Uncharacterized protein UPF0065.	0.873
RPD_2024	RPD_1498	Protein of unknown function DUF112, transmembrane.	Uncharacterized protein UPF0065.	0.874
RPD_2024	RPD_2025	Protein of unknown function DUF112, transmembrane.	Conserved hypothetical protein.	0.956
RPD_2024	RPD_2026	Protein of unknown function DUF112, transmembrane.	Uncharacterized protein UPF0065.	0.935
RPD_2024	RPD_3010	Protein of unknown function DUF112, transmembrane.	Twin-arginine translocation pathway signal.	0.874
RPD_2024	RPD_3355	Protein of unknown function DUF112, transmembrane.	Uncharacterized protein UPF0065.	0.874