(43 nodes) Mostly uncharacterized, incl. Ubiquinone and other terpenoid-quinone biosynthesis, and protein-DNA complex network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0163	NmrA-like protein. (223 aa)
	RPB_0185	Alpha/beta hydrolase. (280 aa)
	RPB_0186	Amidohydrolase-like. (625 aa)
	RPB_0187	Protein of unknown function DUF1427. (95 aa)
	RPB_0188	Isochorismatase hydrolase. (216 aa)
	RPB_0189	Conserved hypothetical protein. (539 aa)
	RPB_0194	Alpha/beta hydrolase. (280 aa)
	RPB_0195	Ferritin and Dps; Belongs to the Dps family. (173 aa)
	RPB_0196	Conserved hypothetical protein. (78 aa)
	RPB_0323	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (162 aa)
	RPB_0703	Pirin-like protein; Belongs to the pirin family. (305 aa)
	RPB_0823	NAD(P)H dehydrogenase (quinone). (266 aa)
	RPB_0824	Conserved hypothetical protein. (66 aa)
	RPB_0825	Protein of unknown function DUF1428. (116 aa)
	RPB_0828	Conserved hypothetical protein. (83 aa)
	RPB_0853	Ferritin and Dps; Belongs to the Dps family. (160 aa)
	RPB_0854	Conserved hypothetical protein. (333 aa)
	RPB_0892	AsmA. (655 aa)
	RPB_1365	Putative signal-transduction protein with CBS domains. (243 aa)
	RPB_1366	UspA. (277 aa)
	RPB_1367	UspA. (276 aa)
	RPB_1394	CsbD-like; Belongs to the UPF0337 (CsbD) family. (67 aa)
	RPB_1766	Luciferase-like. (338 aa)
	RPB_2024	Protein of unknown function DUF1328. (57 aa)
	RPB_2322	Alcohol dehydrogenase superfamily, zinc-containing; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (337 aa)
	RPB_2323	Peptidase S1C, Do; Belongs to the peptidase S1C family. (463 aa)
	RPB_2324	Recombination protein MgsA. (444 aa)
	RPB_2415	Major facilitator superfamily MFS_1. (415 aa)
	RPB_2498	DoxX. (149 aa)
	RPB_2510	Protein of unknown function DUF1328. (57 aa)
	RPB_2618	NmrA-like protein. (294 aa)
	RPB_2619	Putative transcriptional regulator. (164 aa)
	RPB_2692	Hypothetical protein. (219 aa)
	RPB_2693	Putative transcriptional regulator. (235 aa)
	RPB_2724	Conserved hypothetical protein. (96 aa)
	RPB_3163	Conserved hypothetical protein. (875 aa)
	RPB_3859	Transport-associated protein. (216 aa)
	RPB_4225	CsbD-like; Belongs to the UPF0337 (CsbD) family. (71 aa)
	RPB_4387	Short-chain dehydrogenase/reductase. (260 aa)
	RPB_4388	Conserved hypothetical protein. (108 aa)
	RPB_4389	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (314 aa)
	RPB_4505	Pirin-like protein; Belongs to the pirin family. (232 aa)
	RPB_4506	Flavoprotein WrbA. (199 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0163	RPB_0323	NmrA-like protein.	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding.	0.657
RPB_0163	RPB_1394	NmrA-like protein.	CsbD-like; Belongs to the UPF0337 (CsbD) family.	0.534
RPB_0163	RPB_2619	NmrA-like protein.	Putative transcriptional regulator.	0.494
RPB_0163	RPB_2693	NmrA-like protein.	Putative transcriptional regulator.	0.494
RPB_0163	RPB_2724	NmrA-like protein.	Conserved hypothetical protein.	0.824
RPB_0163	RPB_4225	NmrA-like protein.	CsbD-like; Belongs to the UPF0337 (CsbD) family.	0.534
RPB_0186	RPB_0187	Amidohydrolase-like.	Protein of unknown function DUF1427.	0.951
RPB_0186	RPB_0188	Amidohydrolase-like.	Isochorismatase hydrolase.	0.937
RPB_0186	RPB_0189	Amidohydrolase-like.	Conserved hypothetical protein.	0.619
RPB_0186	RPB_2498	Amidohydrolase-like.	DoxX.	0.430
RPB_0187	RPB_0186	Protein of unknown function DUF1427.	Amidohydrolase-like.	0.951
RPB_0187	RPB_0188	Protein of unknown function DUF1427.	Isochorismatase hydrolase.	0.922
RPB_0187	RPB_0189	Protein of unknown function DUF1427.	Conserved hypothetical protein.	0.516
RPB_0188	RPB_0186	Isochorismatase hydrolase.	Amidohydrolase-like.	0.937
RPB_0188	RPB_0187	Isochorismatase hydrolase.	Protein of unknown function DUF1427.	0.922
RPB_0188	RPB_0189	Isochorismatase hydrolase.	Conserved hypothetical protein.	0.574
RPB_0188	RPB_0703	Isochorismatase hydrolase.	Pirin-like protein; Belongs to the pirin family.	0.417
RPB_0188	RPB_2498	Isochorismatase hydrolase.	DoxX.	0.418
RPB_0188	RPB_4506	Isochorismatase hydrolase.	Flavoprotein WrbA.	0.523
RPB_0189	RPB_0186	Conserved hypothetical protein.	Amidohydrolase-like.	0.619