(10 nodes) Mixed, incl. YCII-related, and Sigma-70, region 4 network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_1804	DGPF protein. (136 aa)
	RPB_1805	Transcriptional regulator, TetR family. (235 aa)
	RPB_1806	Conserved hypothetical protein. (156 aa)
	RPB_1807	Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (155 aa)
	RPB_1808	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. (301 aa)
	RPB_4223	3-demethylubiquinone-9 3-methyltransferase. (160 aa)
	RPB_4259	Putative sigma factor; Belongs to the sigma-70 factor family. (421 aa)
	RPB_4260	DGPF protein. (123 aa)
	RPB_4261	Glyoxalase/bleomycin resistance protein/dioxygenase. (156 aa)
	RPB_4262	Transcriptional regulator, TetR family. (226 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_1804	RPB_1805	DGPF protein.	Transcriptional regulator, TetR family.	0.427
RPB_1804	RPB_1808	DGPF protein.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family.	0.592
RPB_1804	RPB_4223	DGPF protein.	3-demethylubiquinone-9 3-methyltransferase.	0.579
RPB_1804	RPB_4259	DGPF protein.	Putative sigma factor; Belongs to the sigma-70 factor family.	0.804
RPB_1804	RPB_4260	DGPF protein.	DGPF protein.	0.820
RPB_1804	RPB_4261	DGPF protein.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.660
RPB_1805	RPB_1804	Transcriptional regulator, TetR family.	DGPF protein.	0.427
RPB_1805	RPB_1806	Transcriptional regulator, TetR family.	Conserved hypothetical protein.	0.853
RPB_1806	RPB_1805	Conserved hypothetical protein.	Transcriptional regulator, TetR family.	0.853
RPB_1806	RPB_1807	Conserved hypothetical protein.	Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.470
RPB_1806	RPB_1808	Conserved hypothetical protein.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family.	0.470
RPB_1807	RPB_1806	Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Conserved hypothetical protein.	0.470
RPB_1807	RPB_1808	Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family.	0.959
RPB_1807	RPB_4262	Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Transcriptional regulator, TetR family.	0.505
RPB_1808	RPB_1804	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family.	DGPF protein.	0.592
RPB_1808	RPB_1806	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family.	Conserved hypothetical protein.	0.470
RPB_1808	RPB_1807	Sigma-24 (FecI-like); Belongs to the sigma-70 factor family.	Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.959
RPB_4223	RPB_1804	3-demethylubiquinone-9 3-methyltransferase.	DGPF protein.	0.579
RPB_4223	RPB_4261	3-demethylubiquinone-9 3-methyltransferase.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.704
RPB_4259	RPB_1804	Putative sigma factor; Belongs to the sigma-70 factor family.	DGPF protein.	0.804