(16 nodes) Mixed, incl. RTX calcium-binding nonapeptide repeat, and Type I secretion membrane fusion protein, HlyD family network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0801	Type I secretion membrane fusion protein, HlyD. (440 aa)
	RPB_0802	Type I secretion system ATPase, PrtD. (593 aa)
	RPB_0804	Hemolysin-type calcium-binding region. (2885 aa)
	RPB_0805	Glycerophosphoryl diester phosphodiesterase. (1236 aa)
	RPB_1633	Type I secretion outer membrane protein, TolC. (519 aa)
	RPB_1634	ABC transporter related. (730 aa)
	RPB_1637	VCBS. (2127 aa)
	RPB_1638	VCBS. (5094 aa)
	RPB_1639	Type I secretion system ATPase, PrtD. (582 aa)
	RPB_1640	Type I secretion membrane fusion protein, HlyD. (445 aa)
	RPB_2241	Type I secretion outer membrane protein, TolC. (524 aa)
	RPB_2242	ABC transporter related. (718 aa)
	RPB_2243	Type I secretion membrane fusion protein, HlyD. (444 aa)
	RPB_2244	Conserved hypothetical protein. (328 aa)
	RPB_2246	VCBS. (5769 aa)
	RPB_3504	Chloride peroxidase. (598 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0801	RPB_0802	Type I secretion membrane fusion protein, HlyD.	Type I secretion system ATPase, PrtD.	0.958
RPB_0801	RPB_0804	Type I secretion membrane fusion protein, HlyD.	Hemolysin-type calcium-binding region.	0.712
RPB_0801	RPB_0805	Type I secretion membrane fusion protein, HlyD.	Glycerophosphoryl diester phosphodiesterase.	0.571
RPB_0801	RPB_1633	Type I secretion membrane fusion protein, HlyD.	Type I secretion outer membrane protein, TolC.	0.812
RPB_0801	RPB_1634	Type I secretion membrane fusion protein, HlyD.	ABC transporter related.	0.877
RPB_0801	RPB_1637	Type I secretion membrane fusion protein, HlyD.	VCBS.	0.453
RPB_0801	RPB_1639	Type I secretion membrane fusion protein, HlyD.	Type I secretion system ATPase, PrtD.	0.828
RPB_0801	RPB_2241	Type I secretion membrane fusion protein, HlyD.	Type I secretion outer membrane protein, TolC.	0.795
RPB_0801	RPB_2242	Type I secretion membrane fusion protein, HlyD.	ABC transporter related.	0.879
RPB_0801	RPB_2244	Type I secretion membrane fusion protein, HlyD.	Conserved hypothetical protein.	0.503
RPB_0801	RPB_2246	Type I secretion membrane fusion protein, HlyD.	VCBS.	0.588
RPB_0802	RPB_0801	Type I secretion system ATPase, PrtD.	Type I secretion membrane fusion protein, HlyD.	0.958
RPB_0802	RPB_0804	Type I secretion system ATPase, PrtD.	Hemolysin-type calcium-binding region.	0.660
RPB_0802	RPB_0805	Type I secretion system ATPase, PrtD.	Glycerophosphoryl diester phosphodiesterase.	0.537
RPB_0802	RPB_1633	Type I secretion system ATPase, PrtD.	Type I secretion outer membrane protein, TolC.	0.413
RPB_0802	RPB_1639	Type I secretion system ATPase, PrtD.	Type I secretion system ATPase, PrtD.	0.445
RPB_0802	RPB_1640	Type I secretion system ATPase, PrtD.	Type I secretion membrane fusion protein, HlyD.	0.828
RPB_0802	RPB_2243	Type I secretion system ATPase, PrtD.	Type I secretion membrane fusion protein, HlyD.	0.728
RPB_0804	RPB_0801	Hemolysin-type calcium-binding region.	Type I secretion membrane fusion protein, HlyD.	0.712
RPB_0804	RPB_0802	Hemolysin-type calcium-binding region.	Type I secretion system ATPase, PrtD.	0.660