(15 nodes) Mixed, incl. ABC transporter, permease, and Branched-chain amino acid ATP-binding cassette transporter network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_1579	Extracellular ligand-binding receptor. (392 aa)
	RPB_1580	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (288 aa)
	RPB_1581	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (339 aa)
	RPB_1582	ABC transporter related. (250 aa)
	RPB_1583	ABC transporter related. (240 aa)
	RPB_2270	Extracellular ligand-binding receptor. (391 aa)
	RPB_2271	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
	RPB_2272	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (332 aa)
	RPB_2273	ABC transporter related. (254 aa)
	RPB_2274	ABC transporter related. (237 aa)
	RPB_4658	ABC transporter related. (236 aa)
	RPB_4659	ABC transporter related. (252 aa)
	RPB_4660	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
	RPB_4661	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (290 aa)
	RPB_4662	Twin-arginine translocation pathway signal. (402 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_1579	RPB_1580	Extracellular ligand-binding receptor.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.890
RPB_1579	RPB_1581	Extracellular ligand-binding receptor.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.893
RPB_1579	RPB_1582	Extracellular ligand-binding receptor.	ABC transporter related.	0.858
RPB_1579	RPB_1583	Extracellular ligand-binding receptor.	ABC transporter related.	0.812
RPB_1579	RPB_2271	Extracellular ligand-binding receptor.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.773
RPB_1579	RPB_2272	Extracellular ligand-binding receptor.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.780
RPB_1579	RPB_2273	Extracellular ligand-binding receptor.	ABC transporter related.	0.635
RPB_1579	RPB_2274	Extracellular ligand-binding receptor.	ABC transporter related.	0.519
RPB_1579	RPB_4658	Extracellular ligand-binding receptor.	ABC transporter related.	0.524
RPB_1579	RPB_4659	Extracellular ligand-binding receptor.	ABC transporter related.	0.505
RPB_1579	RPB_4660	Extracellular ligand-binding receptor.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.650
RPB_1579	RPB_4661	Extracellular ligand-binding receptor.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.663
RPB_1580	RPB_1579	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Extracellular ligand-binding receptor.	0.890
RPB_1580	RPB_1581	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.997
RPB_1580	RPB_1582	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter related.	0.968
RPB_1580	RPB_1583	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter related.	0.949
RPB_1580	RPB_2270	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Extracellular ligand-binding receptor.	0.809
RPB_1580	RPB_2272	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.854
RPB_1580	RPB_2273	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter related.	0.796
RPB_1580	RPB_2274	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter related.	0.761