(5 nodes) Transglycosylase, and Beta-lactamase enzyme family network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0041	Penicillin-binding protein 1A. (735 aa)
	RPB_2678	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (419 aa)
	RPB_3007	Penicillin-binding protein 1A. (830 aa)
	RPB_3506	Penicillin-binding protein 1A. (769 aa)
	RPB_4245	Peptidase M23B. (680 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0041	RPB_2678	Penicillin-binding protein 1A.	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.	0.912
RPB_0041	RPB_3007	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.945
RPB_0041	RPB_3506	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.913
RPB_0041	RPB_4245	Penicillin-binding protein 1A.	Peptidase M23B.	0.617
RPB_2678	RPB_0041	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.	Penicillin-binding protein 1A.	0.912
RPB_2678	RPB_3007	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.	Penicillin-binding protein 1A.	0.914
RPB_2678	RPB_3506	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.	Penicillin-binding protein 1A.	0.912
RPB_3007	RPB_0041	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.945
RPB_3007	RPB_2678	Penicillin-binding protein 1A.	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.	0.914
RPB_3007	RPB_3506	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.947
RPB_3007	RPB_4245	Penicillin-binding protein 1A.	Peptidase M23B.	0.600
RPB_3506	RPB_0041	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.913
RPB_3506	RPB_2678	Penicillin-binding protein 1A.	Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.	0.912
RPB_3506	RPB_3007	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.947
RPB_3506	RPB_4245	Penicillin-binding protein 1A.	Peptidase M23B.	0.609
RPB_4245	RPB_0041	Peptidase M23B.	Penicillin-binding protein 1A.	0.617
RPB_4245	RPB_3007	Peptidase M23B.	Penicillin-binding protein 1A.	0.600
RPB_4245	RPB_3506	Peptidase M23B.	Penicillin-binding protein 1A.	0.609