13 items (Rhodopseudomonas palustris HaA2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0752	Extracellular ligand-binding receptor. (405 aa)
	RPB_0753	Uncharacterized protein UPF0065. (325 aa)
	RPB_0754	Transcriptional regulator, IclR family. (275 aa)
	RPB_0755	Conserved hypothetical protein. (62 aa)
	RPB_2033	TctB subunit of the tripartite tricarboxylate transport(TTT) family. (166 aa)
	RPB_2034	Protein of unknown function DUF112, transmembrane. (505 aa)
	RPB_2035	Uncharacterized protein UPF0065. (334 aa)
	RPB_2443	Uncharacterized protein UPF0065. (339 aa)
	RPB_3428	Uncharacterized protein UPF0065. (337 aa)
	RPB_3429	Conserved hypothetical protein. (165 aa)
	RPB_3430	Protein of unknown function DUF112, transmembrane. (510 aa)
	RPB_3851	Uncharacterized protein UPF0065. (352 aa)
	RPB_4334	Twin-arginine translocation pathway signal. (335 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0752	RPB_0753	Extracellular ligand-binding receptor.	Uncharacterized protein UPF0065.	0.575
RPB_0752	RPB_0754	Extracellular ligand-binding receptor.	Transcriptional regulator, IclR family.	0.406
RPB_0753	RPB_0752	Uncharacterized protein UPF0065.	Extracellular ligand-binding receptor.	0.575
RPB_0753	RPB_0754	Uncharacterized protein UPF0065.	Transcriptional regulator, IclR family.	0.645
RPB_0753	RPB_2033	Uncharacterized protein UPF0065.	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	0.593
RPB_0753	RPB_2034	Uncharacterized protein UPF0065.	Protein of unknown function DUF112, transmembrane.	0.868
RPB_0753	RPB_3429	Uncharacterized protein UPF0065.	Conserved hypothetical protein.	0.546
RPB_0753	RPB_3430	Uncharacterized protein UPF0065.	Protein of unknown function DUF112, transmembrane.	0.868
RPB_0754	RPB_0752	Transcriptional regulator, IclR family.	Extracellular ligand-binding receptor.	0.406
RPB_0754	RPB_0753	Transcriptional regulator, IclR family.	Uncharacterized protein UPF0065.	0.645
RPB_0754	RPB_0755	Transcriptional regulator, IclR family.	Conserved hypothetical protein.	0.475
RPB_0755	RPB_0754	Conserved hypothetical protein.	Transcriptional regulator, IclR family.	0.475
RPB_2033	RPB_0753	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Uncharacterized protein UPF0065.	0.593
RPB_2033	RPB_2034	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Protein of unknown function DUF112, transmembrane.	0.941
RPB_2033	RPB_2035	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Uncharacterized protein UPF0065.	0.877
RPB_2033	RPB_2443	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Uncharacterized protein UPF0065.	0.653
RPB_2033	RPB_3428	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Uncharacterized protein UPF0065.	0.566
RPB_2033	RPB_3429	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Conserved hypothetical protein.	0.918
RPB_2033	RPB_3430	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Protein of unknown function DUF112, transmembrane.	0.688
RPB_2033	RPB_3851	TctB subunit of the tripartite tricarboxylate transport(TTT) family.	Uncharacterized protein UPF0065.	0.757