(33 nodes) SsuA/THI5-like, and Alkanesulfonate transport network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0933	Binding-protein-dependent transport systems inner membrane component. (261 aa)
	RPB_0934	ABC related periplasmic binding protein. (330 aa)
	RPB_0935	ABC transporter related. (278 aa)
	RPB_0936	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (557 aa)
	RPB_0937	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (332 aa)
	RPB_1472	ABC transporter related. (292 aa)
	RPB_1473	Binding-protein-dependent transport systems inner membrane component. (306 aa)
	RPB_1474	ABC transporter substrate-binding protein. (473 aa)
	RPB_1481	ABC transporter related. (283 aa)
	RPB_1482	Binding-protein-dependent transport systems inner membrane component. (253 aa)
	RPB_1483	ABC transporter substrate-binding protein. (330 aa)
	RPB_1487	Extracellular solute-binding protein, family 3. (334 aa)
	RPB_1488	Binding-protein-dependent transport systems inner membrane component. (280 aa)
	RPB_1489	Acetylornithine deacetylase. (432 aa)
	RPB_2836	ABC transporter related. (272 aa)
	RPB_2837	Binding-protein-dependent transport systems inner membrane component. (266 aa)
	RPB_2838	Twin-arginine translocation pathway signal. (318 aa)
	RPB_3091	Conserved hypothetical protein. (362 aa)
	RPB_3092	ABC transporter related. (275 aa)
	RPB_3093	Binding-protein-dependent transport systems inner membrane component. (259 aa)
	RPB_3098	Putative exported protein. (364 aa)
	RPB_3099	Binding-protein-dependent transport systems inner membrane component. (261 aa)
	RPB_3100	ABC transporter related. (276 aa)
	RPB_3110	Twin-arginine translocation pathway signal. (346 aa)
	RPB_3118	Binding-protein-dependent transport systems inner membrane component. (284 aa)
	RPB_3119	ABC transporter related. (267 aa)
	RPB_3120	Twin-arginine translocation pathway signal. (340 aa)
	RPB_3333	Extracellular solute-binding protein, family 3. (341 aa)
	RPB_3334	Binding-protein-dependent transport systems inner membrane component. (265 aa)
	RPB_3335	ABC transporter related. (268 aa)
	RPB_4058	Twin-arginine translocation pathway signal. (329 aa)
	RPB_4059	ABC transporter related. (276 aa)
	RPB_4060	Binding-protein-dependent transport systems inner membrane component. (256 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0933	RPB_0934	Binding-protein-dependent transport systems inner membrane component.	ABC related periplasmic binding protein.	0.925
RPB_0933	RPB_0935	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.905
RPB_0933	RPB_0936	Binding-protein-dependent transport systems inner membrane component.	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.	0.566
RPB_0933	RPB_0937	Binding-protein-dependent transport systems inner membrane component.	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.	0.463
RPB_0933	RPB_1472	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.811
RPB_0933	RPB_1481	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.827
RPB_0933	RPB_1483	Binding-protein-dependent transport systems inner membrane component.	ABC transporter substrate-binding protein.	0.826
RPB_0933	RPB_1487	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein, family 3.	0.835
RPB_0933	RPB_2836	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.824
RPB_0933	RPB_2838	Binding-protein-dependent transport systems inner membrane component.	Twin-arginine translocation pathway signal.	0.831
RPB_0933	RPB_3091	Binding-protein-dependent transport systems inner membrane component.	Conserved hypothetical protein.	0.539
RPB_0933	RPB_3092	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.817
RPB_0933	RPB_3098	Binding-protein-dependent transport systems inner membrane component.	Putative exported protein.	0.669
RPB_0933	RPB_3100	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.824
RPB_0933	RPB_3110	Binding-protein-dependent transport systems inner membrane component.	Twin-arginine translocation pathway signal.	0.590
RPB_0933	RPB_3119	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.817
RPB_0933	RPB_3120	Binding-protein-dependent transport systems inner membrane component.	Twin-arginine translocation pathway signal.	0.553
RPB_0933	RPB_3333	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein, family 3.	0.526
RPB_0933	RPB_3335	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.728
RPB_0933	RPB_4058	Binding-protein-dependent transport systems inner membrane component.	Twin-arginine translocation pathway signal.	0.783