(12 nodes) SsuA/THI5-like, and Alkanesulfonate transport network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_1472	ABC transporter related. (292 aa)
	RPB_1473	Binding-protein-dependent transport systems inner membrane component. (306 aa)
	RPB_1474	ABC transporter substrate-binding protein. (473 aa)
	RPB_1481	ABC transporter related. (283 aa)
	RPB_1482	Binding-protein-dependent transport systems inner membrane component. (253 aa)
	RPB_1483	ABC transporter substrate-binding protein. (330 aa)
	RPB_2836	ABC transporter related. (272 aa)
	RPB_2837	Binding-protein-dependent transport systems inner membrane component. (266 aa)
	RPB_2838	Twin-arginine translocation pathway signal. (318 aa)
	RPB_4058	Twin-arginine translocation pathway signal. (329 aa)
	RPB_4059	ABC transporter related. (276 aa)
	RPB_4060	Binding-protein-dependent transport systems inner membrane component. (256 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_1472	RPB_1473	ABC transporter related.	Binding-protein-dependent transport systems inner membrane component.	0.963
RPB_1472	RPB_1474	ABC transporter related.	ABC transporter substrate-binding protein.	0.914
RPB_1472	RPB_1481	ABC transporter related.	ABC transporter related.	0.907
RPB_1472	RPB_1482	ABC transporter related.	Binding-protein-dependent transport systems inner membrane component.	0.838
RPB_1472	RPB_1483	ABC transporter related.	ABC transporter substrate-binding protein.	0.748
RPB_1472	RPB_2837	ABC transporter related.	Binding-protein-dependent transport systems inner membrane component.	0.829
RPB_1472	RPB_2838	ABC transporter related.	Twin-arginine translocation pathway signal.	0.537
RPB_1472	RPB_4058	ABC transporter related.	Twin-arginine translocation pathway signal.	0.709
RPB_1472	RPB_4060	ABC transporter related.	Binding-protein-dependent transport systems inner membrane component.	0.833
RPB_1473	RPB_1472	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.963
RPB_1473	RPB_1474	Binding-protein-dependent transport systems inner membrane component.	ABC transporter substrate-binding protein.	0.952
RPB_1473	RPB_1481	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.846
RPB_1473	RPB_1483	Binding-protein-dependent transport systems inner membrane component.	ABC transporter substrate-binding protein.	0.838
RPB_1473	RPB_2836	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.832
RPB_1473	RPB_2838	Binding-protein-dependent transport systems inner membrane component.	Twin-arginine translocation pathway signal.	0.732
RPB_1473	RPB_4058	Binding-protein-dependent transport systems inner membrane component.	Twin-arginine translocation pathway signal.	0.789
RPB_1473	RPB_4059	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related.	0.839
RPB_1474	RPB_1472	ABC transporter substrate-binding protein.	ABC transporter related.	0.914
RPB_1474	RPB_1473	ABC transporter substrate-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.952
RPB_1474	RPB_1481	ABC transporter substrate-binding protein.	ABC transporter related.	0.522