(14 nodes) Mixed, incl. Nitrate/bicarbonate ABC transporter substrate-binding domain, and Nitrate transport permease network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0303	Transcriptional regulator, TetR family. (200 aa)
	RPB_0304	Conserved hypothetical protein. (190 aa)
	RPB_0305	Putative acyl-CoA dehydrogenase. (376 aa)
	RPB_0307	ABC transporter related. (293 aa)
	RPB_0308	Twin-arginine translocation pathway signal. (414 aa)
	RPB_0309	Binding-protein-dependent transport systems inner membrane component. (277 aa)
	RPB_1758	Nitrate transport ATP-binding subunits C and D. (264 aa)
	RPB_1759	Nitrate transport permease. (299 aa)
	RPB_1760	Twin-arginine translocation pathway signal. (434 aa)
	RPB_1761	Nitrate transporter component, nrtA. (386 aa)
	RPB_1762	Response regulator receiver and ANTAR domain protein. (194 aa)
	RPB_2054	Twin-arginine translocation pathway signal. (462 aa)
	RPB_2055	Nitrate transport permease. (279 aa)
	RPB_2056	ABC transporter related. (305 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0303	RPB_0304	Transcriptional regulator, TetR family.	Conserved hypothetical protein.	0.645
RPB_0303	RPB_0305	Transcriptional regulator, TetR family.	Putative acyl-CoA dehydrogenase.	0.611
RPB_0304	RPB_0303	Conserved hypothetical protein.	Transcriptional regulator, TetR family.	0.645
RPB_0304	RPB_0305	Conserved hypothetical protein.	Putative acyl-CoA dehydrogenase.	0.924
RPB_0304	RPB_0307	Conserved hypothetical protein.	ABC transporter related.	0.449
RPB_0304	RPB_0308	Conserved hypothetical protein.	Twin-arginine translocation pathway signal.	0.812
RPB_0304	RPB_0309	Conserved hypothetical protein.	Binding-protein-dependent transport systems inner membrane component.	0.688
RPB_0304	RPB_2054	Conserved hypothetical protein.	Twin-arginine translocation pathway signal.	0.506
RPB_0304	RPB_2055	Conserved hypothetical protein.	Nitrate transport permease.	0.469
RPB_0305	RPB_0303	Putative acyl-CoA dehydrogenase.	Transcriptional regulator, TetR family.	0.611
RPB_0305	RPB_0304	Putative acyl-CoA dehydrogenase.	Conserved hypothetical protein.	0.924
RPB_0305	RPB_0307	Putative acyl-CoA dehydrogenase.	ABC transporter related.	0.486
RPB_0305	RPB_0308	Putative acyl-CoA dehydrogenase.	Twin-arginine translocation pathway signal.	0.849
RPB_0305	RPB_0309	Putative acyl-CoA dehydrogenase.	Binding-protein-dependent transport systems inner membrane component.	0.753
RPB_0305	RPB_2054	Putative acyl-CoA dehydrogenase.	Twin-arginine translocation pathway signal.	0.654
RPB_0305	RPB_2055	Putative acyl-CoA dehydrogenase.	Nitrate transport permease.	0.552
RPB_0305	RPB_2056	Putative acyl-CoA dehydrogenase.	ABC transporter related.	0.457
RPB_0307	RPB_0304	ABC transporter related.	Conserved hypothetical protein.	0.449
RPB_0307	RPB_0305	ABC transporter related.	Putative acyl-CoA dehydrogenase.	0.486
RPB_0307	RPB_0308	ABC transporter related.	Twin-arginine translocation pathway signal.	0.875