STRINGSTRING
RPB_2078 RPB_2078 RPB_2076 RPB_2076 RPB_2074 RPB_2074 RPB_1764 RPB_1764 RPB_1731 RPB_1731 RPB_1719 RPB_1719 RPB_1703 RPB_1703 RPB_1502 RPB_1502 RPB_1493 RPB_1493 RPB_1491 RPB_1491 RPB_1360 RPB_1360 RPB_1297 RPB_1297 RPB_1235 RPB_1235 RPB_1232 RPB_1232 RPB_1184 RPB_1184 RPB_1155 RPB_1155 RPB_1001 RPB_1001 RPB_0998 RPB_0998 RPB_0981 RPB_0981 RPB_0851 RPB_0851 RPB_0844 RPB_0844 lysA lysA RPB_0203 RPB_0203 RPB_0278 RPB_0278 RPB_0298 RPB_0298 RPB_0376 RPB_0376 RPB_0383 RPB_0383 RPB_2457 RPB_2457 RPB_0450 RPB_0450 RPB_0663 RPB_0663 argD argD metZ metZ RPB_4578 RPB_4578 RPB_4563 RPB_4563 dxs dxs acpP acpP RPB_2516 RPB_2516 RPB_2544 RPB_2544 glyA glyA RPB_2667 RPB_2667 RPB_2687 RPB_2687 RPB_2913 RPB_2913 RPB_2967 RPB_2967 RPB_2990 RPB_2990 RPB_2995 RPB_2995 RPB_3012 RPB_3012 RPB_3134 RPB_3134 RPB_3137 RPB_3137 RPB_3203 RPB_3203 RPB_3345 RPB_3345 RPB_3359 RPB_3359 RPB_3361 RPB_3361 RPB_3536 RPB_3536 RPB_3538 RPB_3538 trpB-2 trpB-2 RPB_3802 RPB_3802 RPB_3863 RPB_3863 RPB_3930 RPB_3930 RPB_3938 RPB_3938 RPB_3960 RPB_3960 RPB_3969 RPB_3969 RPB_3983 RPB_3983 RPB_4248 RPB_4248 hisC hisC RPB_4283 RPB_4283 RPB_4342 RPB_4342 RPB_4344 RPB_4344 RPB_4420 RPB_4420 RPB_0135 RPB_0135 RPB_2425 RPB_2425 RPB_2089 RPB_2089
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPB_2078Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (428 aa)
RPB_2076Aminotransferase. (487 aa)
RPB_2074Radical SAM binding protein. (598 aa)
RPB_1764Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1304 aa)
RPB_1731Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (463 aa)
RPB_1719Ethanolamine ammonia-lyase light chain; Belongs to the EutC family. (259 aa)
RPB_1703Acetolactate synthase, large subunit; Belongs to the TPP enzyme family. (558 aa)
RPB_1502Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (388 aa)
RPB_1493Transcriptional regulator, GntR family. (497 aa)
RPB_1491Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (463 aa)
RPB_1360O-acetylhomoserine/O-acetylserine sulfhydrylase. (435 aa)
RPB_1297Aminotransferase. (400 aa)
RPB_12352-oxoglutarate ferredoxin oxidoreductase, beta subunit. (270 aa)
RPB_1232Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (607 aa)
RPB_1184Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa)
RPB_1155Aminotransferase. (344 aa)
RPB_1001O-acetylhomoserine/O-acetylserine sulfhydrylase. (434 aa)
RPB_0998Acetolactate synthase, large subunit; Belongs to the TPP enzyme family. (559 aa)
RPB_0981Nitrogenase cofactor synthesis protein nifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (407 aa)
RPB_0851Pyruvate flavodoxin/ferredoxin oxidoreductase. (1652 aa)
RPB_0844Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (836 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (421 aa)
RPB_0203Pyruvate dehydrogenase (cytochrome); Belongs to the TPP enzyme family. (576 aa)
RPB_02782-oxoglutarate dehydrogenase E1 component. (985 aa)
RPB_0298Photosynthesis gene regulator, AppA/PpaA family. (271 aa)
RPB_0376Aminotransferase. (420 aa)
RPB_0383Protein of unknown function UPF0001; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (221 aa)
RPB_2457Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (423 aa)
RPB_0450Methionine gamma-lyase. (399 aa)
RPB_06634Fe-4S ferredoxin, iron-sulfur binding. (382 aa)
argDAcetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (407 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (408 aa)
RPB_4578L-threonine synthase. (472 aa)
RPB_45635-aminolevulinate synthase. (409 aa)
dxs1-Deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (638 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (79 aa)
RPB_2516MOSC. (165 aa)
RPB_2544Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (1257 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (433 aa)
RPB_2667O-acetylhomoserine/O-acetylserine sulfhydrylase. (426 aa)
RPB_2687Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. (508 aa)
RPB_2913Cystathionine beta-lyase. (398 aa)
RPB_2967Aminotransferase. (406 aa)
RPB_2990Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (428 aa)
RPB_2995Cysteine desulfurase. (388 aa)
RPB_3012Aminotransferase. (395 aa)
RPB_3134Acetolactate synthase I. (527 aa)
RPB_31374-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (424 aa)
RPB_3203Alanine racemase-like. (360 aa)
RPB_3345Acetolactate synthase, large subunit. (592 aa)
RPB_3359Radical SAM. (653 aa)
RPB_3361Aminotransferase. (384 aa)
RPB_3536Methylmalonyl-CoA mutase. (623 aa)
RPB_3538methylmalonyl-CoA mutase. (736 aa)
trpB-2Tryptophan synthase, beta chain-like; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (454 aa)
RPB_3802Acetolactate synthase large subunit; Belongs to the TPP enzyme family. (600 aa)
RPB_3863Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. (580 aa)
RPB_3930Acetolactate synthase large subunit. (514 aa)
RPB_3938Benzoylformate decarboxylase; Belongs to the TPP enzyme family. (540 aa)
RPB_3960O-acetylhomoserine/O-acetylserine sulfhydrylase. (433 aa)
RPB_39695-aminolevulinate synthase. (403 aa)
RPB_3983Cobalamin B12-binding. (297 aa)
RPB_4248MOSC. (256 aa)
hisCHistidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (365 aa)
RPB_4283Pyridoxal-dependent decarboxylase. (486 aa)
RPB_4342Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (419 aa)
RPB_43448-amino-7-oxononanoate synthase. (376 aa)
RPB_4420L-threonine synthase. (420 aa)
RPB_0135Transcriptional regulator, GntR family. (527 aa)
RPB_2425Phenylpyruvate decarboxylase. (543 aa)
RPB_20892OG-Fe(II) oxygenase. (229 aa)
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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