(42 nodes) Periplasmic binding protein-like I network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_4690	Extracellular ligand-binding receptor. (397 aa)
	RPB_1574	ABC transporter, periplasmic branched chain amino acid binding protein. (409 aa)
	RPB_1556	Branched-chain amino acid ABC transport system substrate-binding protein. (426 aa)
	RPB_1252	Amide-urea binding protein. (392 aa)
	RPB_1152	UreA/short-chain amide ABC transporter. (415 aa)
	RPB_0942	Twin-arginine translocation pathway signal. (407 aa)
	RPB_0939	Nitrile hydratase regulator. (395 aa)
	RPB_0752	Extracellular ligand-binding receptor. (405 aa)
	RPB_0692	Extracellular ligand-binding receptor. (379 aa)
	RPB_0554	ureA/short-chain amide ABC transporter. (402 aa)
	RPB_0422	Extracellular ligand-binding receptor. (399 aa)
	RPB_3892	Extracellular ligand-binding receptor. (381 aa)
	RPB_4103	Extracellular ligand-binding receptor. (401 aa)
	RPB_4662	Twin-arginine translocation pathway signal. (402 aa)
	RPB_4630	Extracellular ligand-binding receptor. (383 aa)
	RPB_4614	Extracellular ligand-binding receptor. (406 aa)
	RPB_4434	Extracellular ligand-binding receptor. (378 aa)
	RPB_4204	Extracellular ligand-binding receptor. (400 aa)
	RPB_2047	Twin-arginine translocation pathway signal. (431 aa)
	RPB_0141	Extracellular ligand-binding receptor. (406 aa)
	RPB_0126	Extracellular ligand-binding receptor. (402 aa)
	RPB_0038	Extracellular ligand-binding receptor. (406 aa)
	RPB_1663	Extracellular ligand-binding receptor. (398 aa)
	RPB_1794	Urea transport system substrate-binding protein; Urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor. (440 aa)
	RPB_1740	Extracellular ligand-binding receptor. (435 aa)
	RPB_3620	Twin-arginine translocation pathway signal. (416 aa)
	RPB_3615	Urea/short-chain binding protein of ABC transporter. (404 aa)
	RPB_3575	Extracellular ligand-binding receptor. (385 aa)
	RPB_3566	Extracellular ligand-binding receptor. (411 aa)
	RPB_3339	Extracellular ligand-binding receptor. (410 aa)
	RPB_3265	Twin-arginine translocation pathway signal. (407 aa)
	RPB_3199	Extracellular ligand-binding receptor. (405 aa)
	RPB_4684	Extracellular ligand-binding receptor. (406 aa)
	RPB_2759	Twin-arginine translocation pathway signal. (450 aa)
	RPB_2450	Urea/short-chain binding protein of ABC transporter. (408 aa)
	RPB_2270	Extracellular ligand-binding receptor. (391 aa)
	RPB_2081	Twin-arginine translocation pathway signal. (394 aa)
	RPB_3685	Extracellular ligand-binding receptor. (371 aa)
	RPB_3877	Urea/short-chain binding protein of ABC transporter. (406 aa)
	RPB_1579	Extracellular ligand-binding receptor. (392 aa)
	RPB_1739	Extracellular ligand-binding receptor. (410 aa)
	RPB_1738	Leucine/isoleucine/valine-binding protein precursor. (409 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0692	RPB_2270	Extracellular ligand-binding receptor.	Extracellular ligand-binding receptor.	0.456
RPB_0692	RPB_4662	Extracellular ligand-binding receptor.	Twin-arginine translocation pathway signal.	0.702
RPB_0939	RPB_0942	Nitrile hydratase regulator.	Twin-arginine translocation pathway signal.	0.540
RPB_0939	RPB_1252	Nitrile hydratase regulator.	Amide-urea binding protein.	0.925
RPB_0939	RPB_1794	Nitrile hydratase regulator.	Urea transport system substrate-binding protein; Urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor.	0.927
RPB_0942	RPB_0939	Twin-arginine translocation pathway signal.	Nitrile hydratase regulator.	0.540
RPB_1252	RPB_0939	Amide-urea binding protein.	Nitrile hydratase regulator.	0.925
RPB_1252	RPB_1794	Amide-urea binding protein.	Urea transport system substrate-binding protein; Urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor.	0.912
RPB_1574	RPB_4204	ABC transporter, periplasmic branched chain amino acid binding protein.	Extracellular ligand-binding receptor.	0.665
RPB_1738	RPB_1739	Leucine/isoleucine/valine-binding protein precursor.	Extracellular ligand-binding receptor.	0.939
RPB_1738	RPB_1740	Leucine/isoleucine/valine-binding protein precursor.	Extracellular ligand-binding receptor.	0.927
RPB_1739	RPB_1738	Extracellular ligand-binding receptor.	Leucine/isoleucine/valine-binding protein precursor.	0.939
RPB_1739	RPB_1740	Extracellular ligand-binding receptor.	Extracellular ligand-binding receptor.	0.951
RPB_1740	RPB_1738	Extracellular ligand-binding receptor.	Leucine/isoleucine/valine-binding protein precursor.	0.927
RPB_1740	RPB_1739	Extracellular ligand-binding receptor.	Extracellular ligand-binding receptor.	0.951
RPB_1794	RPB_0939	Urea transport system substrate-binding protein; Urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor.	Nitrile hydratase regulator.	0.927
RPB_1794	RPB_1252	Urea transport system substrate-binding protein; Urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor.	Amide-urea binding protein.	0.912
RPB_2270	RPB_0692	Extracellular ligand-binding receptor.	Extracellular ligand-binding receptor.	0.456
RPB_3566	RPB_3575	Extracellular ligand-binding receptor.	Extracellular ligand-binding receptor.	0.908
RPB_3575	RPB_3566	Extracellular ligand-binding receptor.	Extracellular ligand-binding receptor.	0.908