44 items (Rhodopseudomonas palustris HaA2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0216	Acyl-CoA dehydrogenase-like. (388 aa)
	RPB_0229	AMP-dependent synthetase and ligase. (571 aa)
	RPB_0509	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
	RPB_0559	Acyl-CoA dehydrogenase-like. (355 aa)
	RPB_0701	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	RPB_0946	Iron-containing alcohol dehydrogenase. (395 aa)
	RPB_0992	Acyl-CoA dehydrogenase-like. (408 aa)
	RPB_1146	Acyl-CoA dehydrogenase-like. (431 aa)
	RPB_1148	Alcohol dehydrogenase superfamily, zinc-containing. (339 aa)
	RPB_1153	AMP-dependent synthetase and ligase. (535 aa)
	RPB_1162	Acyl-CoA dehydrogenase-like. (404 aa)
	RPB_1238	Acyl-CoA dehydrogenase-like. (398 aa)
	RPB_1240	Enoyl-CoA hydratase. (282 aa)
	RPB_1344	AMP-dependent synthetase and ligase. (572 aa)
	RPB_1560	AMP-dependent synthetase and ligase. (643 aa)
	RPB_1682	Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	RPB_1746	Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (699 aa)
	RPB_1747	AMP-dependent synthetase and ligase. (561 aa)
	RPB_1748	Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
	RPB_1871	Alcohol dehydrogenase superfamily, zinc-containing. (350 aa)
	RPB_2101	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (389 aa)
	RPB_2121	Enoyl-CoA hydratase/isomerase. (357 aa)
	RPB_2350	Thiolase. (382 aa)
	RPB_2474	Alcohol dehydrogenase, zinc-containing. (352 aa)
	RPB_3077	AMP-dependent synthetase and ligase. (512 aa)
	RPB_3249	Aldehyde dehydrogenase. (476 aa)
	RPB_3267	Acyl-CoA dehydrogenase-like. (379 aa)
	RPB_3418	Alcohol dehydrogenase superfamily, zinc-containing; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (369 aa)
	RPB_3557	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	RPB_3597	AMP-dependent synthetase and ligase. (543 aa)
	RPB_3607	acetyl-CoA acetyltransferase. (503 aa)
	RPB_3645	FAD-binding oxidoreductase. (1072 aa)
	RPB_3656	FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (405 aa)
	RPB_3806	Alcohol dehydrogenase superfamily, zinc-containing. (351 aa)
	RPB_4074	Acyl-CoA dehydrogenase-like. (381 aa)
	RPB_4080	AMP-dependent synthetase and ligase. (518 aa)
	RPB_4102	Acyl-CoA dehydrogenase-like. (415 aa)
	RPB_4151	Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (417 aa)
	RPB_4229	AMP-dependent synthetase and ligase. (512 aa)
	RPB_4604	3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (738 aa)
	RPB_4605	Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
	RPB_4606	Acyl-CoA dehydrogenase-like. (596 aa)
	RPB_4641	Acyl-CoA dehydrogenase-like. (421 aa)
	RPB_4700	AMP-dependent synthetase and ligase. (516 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0216	RPB_0509	Acyl-CoA dehydrogenase-like.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.774
RPB_0216	RPB_0559	Acyl-CoA dehydrogenase-like.	Acyl-CoA dehydrogenase-like.	0.452
RPB_0216	RPB_0701	Acyl-CoA dehydrogenase-like.	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.784
RPB_0216	RPB_1162	Acyl-CoA dehydrogenase-like.	Acyl-CoA dehydrogenase-like.	0.905
RPB_0216	RPB_1240	Acyl-CoA dehydrogenase-like.	Enoyl-CoA hydratase.	0.784
RPB_0216	RPB_1682	Acyl-CoA dehydrogenase-like.	Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.774
RPB_0216	RPB_1746	Acyl-CoA dehydrogenase-like.	Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.785
RPB_0216	RPB_1748	Acyl-CoA dehydrogenase-like.	Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.774
RPB_0216	RPB_2101	Acyl-CoA dehydrogenase-like.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.800
RPB_0216	RPB_2121	Acyl-CoA dehydrogenase-like.	Enoyl-CoA hydratase/isomerase.	0.784
RPB_0216	RPB_2350	Acyl-CoA dehydrogenase-like.	Thiolase.	0.835
RPB_0216	RPB_3557	Acyl-CoA dehydrogenase-like.	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.784
RPB_0216	RPB_3607	Acyl-CoA dehydrogenase-like.	acetyl-CoA acetyltransferase.	0.890
RPB_0216	RPB_4151	Acyl-CoA dehydrogenase-like.	Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.774
RPB_0216	RPB_4604	Acyl-CoA dehydrogenase-like.	3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.921
RPB_0216	RPB_4605	Acyl-CoA dehydrogenase-like.	Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.774
RPB_0229	RPB_1153	AMP-dependent synthetase and ligase.	AMP-dependent synthetase and ligase.	0.713
RPB_0229	RPB_1344	AMP-dependent synthetase and ligase.	AMP-dependent synthetase and ligase.	0.697
RPB_0229	RPB_1560	AMP-dependent synthetase and ligase.	AMP-dependent synthetase and ligase.	0.671
RPB_0229	RPB_1746	AMP-dependent synthetase and ligase.	Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.493