(15 nodes) beta-Lactam resistance network (Rhodopseudomonas palustris HaA2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB_0041	Penicillin-binding protein 1A. (735 aa)
	RPB_0664	Major facilitator superfamily MFS_1. (456 aa)
	RPB_1988	Peptidoglycan glycosyltransferase. (584 aa)
	RPB_2238	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (431 aa)
	RPB_2239	Hydrophobe/amphiphile efflux-1 HAE1. (1048 aa)
	RPB_2340	Twin-arginine translocation pathway signal. (272 aa)
	RPB_2748	Beta-N-acetylhexosaminidase. (341 aa)
	RPB_2894	Type I secretion outer membrane protein, TolC. (460 aa)
	RPB_2903	RND efflux system, outer membrane lipoprotein, NodT. (482 aa)
	RPB_3007	Penicillin-binding protein 1A. (830 aa)
	RPB_3506	Penicillin-binding protein 1A. (769 aa)
	RPB_3558	Type I secretion outer membrane protein, TolC. (472 aa)
	RPB_3608	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (400 aa)
	RPB_4026	Hydrophobe/amphiphile efflux-1 HAE1. (1053 aa)
	RPB_4027	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (399 aa)

Your Current Organism:

Rhodopseudomonas palustris HaA2

NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPB_0041	RPB_1988	Penicillin-binding protein 1A.	Peptidoglycan glycosyltransferase.	0.856
RPB_0041	RPB_3007	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.945
RPB_0041	RPB_3506	Penicillin-binding protein 1A.	Penicillin-binding protein 1A.	0.913
RPB_0664	RPB_2748	Major facilitator superfamily MFS_1.	Beta-N-acetylhexosaminidase.	0.525
RPB_1988	RPB_0041	Peptidoglycan glycosyltransferase.	Penicillin-binding protein 1A.	0.856
RPB_1988	RPB_3007	Peptidoglycan glycosyltransferase.	Penicillin-binding protein 1A.	0.802
RPB_1988	RPB_3506	Peptidoglycan glycosyltransferase.	Penicillin-binding protein 1A.	0.867
RPB_2238	RPB_2239	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hydrophobe/amphiphile efflux-1 HAE1.	0.998
RPB_2238	RPB_2894	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Type I secretion outer membrane protein, TolC.	0.930
RPB_2238	RPB_2903	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND efflux system, outer membrane lipoprotein, NodT.	0.942
RPB_2238	RPB_3558	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Type I secretion outer membrane protein, TolC.	0.936
RPB_2238	RPB_3608	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.909
RPB_2238	RPB_4026	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hydrophobe/amphiphile efflux-1 HAE1.	0.985
RPB_2238	RPB_4027	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.913
RPB_2239	RPB_2238	Hydrophobe/amphiphile efflux-1 HAE1.	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.998
RPB_2239	RPB_2894	Hydrophobe/amphiphile efflux-1 HAE1.	Type I secretion outer membrane protein, TolC.	0.922
RPB_2239	RPB_2903	Hydrophobe/amphiphile efflux-1 HAE1.	RND efflux system, outer membrane lipoprotein, NodT.	0.948
RPB_2239	RPB_3558	Hydrophobe/amphiphile efflux-1 HAE1.	Type I secretion outer membrane protein, TolC.	0.922
RPB_2239	RPB_3608	Hydrophobe/amphiphile efflux-1 HAE1.	Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.948
RPB_2239	RPB_4026	Hydrophobe/amphiphile efflux-1 HAE1.	Hydrophobe/amphiphile efflux-1 HAE1.	0.905