STRINGSTRING
Geob_2819 Geob_2819 Geob_2838 Geob_2838 Geob_2851 Geob_2851 bamJ bamJ vorB vorB Geob_3022 Geob_3022 pilQ pilQ pilN pilN pilM pilM pilW pilW Geob_3207 Geob_3207 Geob_3223 Geob_3223 Geob_3261 Geob_3261 Geob_3357 Geob_3357 Geob_3392 Geob_3392 Geob_3486 Geob_3486 Geob_3495 Geob_3495 Geob_3712 Geob_3712 Geob_3734 Geob_3734 Geob_3814 Geob_3814 mrcA mrcA Geob_0347 Geob_0347 Geob_0438 Geob_0438 Geob_0442 Geob_0442 Geob_0131 Geob_0131 Geob_0132 Geob_0132 gspJ gspJ Geob_0273 Geob_0273 Geob_0476 Geob_0476 mutM-2 mutM-2 Geob_0298 Geob_0298 rlpA rlpA Geob_0931 Geob_0931 pal pal Geob_1160 Geob_1160 Geob_1202 Geob_1202 Geob_1337 Geob_1337 mutM-1 mutM-1 Geob_1582 Geob_1582 Geob_1610 Geob_1610 Geob_1748 Geob_1748 Geob_1822 Geob_1822 Geob_1859 Geob_1859 lptD lptD Geob_1987 Geob_1987 yaeT yaeT Geob_2098 Geob_2098 Geob_2139 Geob_2139 lptE lptE Geob_2378 Geob_2378 Geob_2381 Geob_2381 Geob_2392 Geob_2392 Geob_2496 Geob_2496 pulM pulM korB korB gspL gspL Geob_0829 Geob_0829 yfiO yfiO Geob_0726 Geob_0726 Geob_0622 Geob_0622
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Geob_2819Peptidoglycan L,D-transpeptidase, YkuD family. (174 aa)
Geob_2838Lytic transglycosylase domain protein. (198 aa)
Geob_2851Peptidylprolyl cis-trans isomerase, PpiC-type. (92 aa)
bamJAmino acid aminotransferase, putative. (434 aa)
vorB2-oxoacid:ferredoxin oxidoreductase, thiamin-diphosphate-binding subunit. (247 aa)
Geob_3022Hypothetical protein. (382 aa)
pilQType IV pilus secretin lipoprotein PilQ. (911 aa)
pilNType IV pilus biogenesis protein PilN. (190 aa)
pilMType IV pilus biogenesis ATPase PilM. (350 aa)
pilWType IV pilus minor pilin PilW. (394 aa)
Geob_3207Ligand-gated TonB-dependent outer membrane channel. (607 aa)
Geob_3223Lipoprotein, putative. (202 aa)
Geob_3261Hydrolase or acyltransferase, alpha/beta fold family. (288 aa)
Geob_3357Hypothetical protein. (826 aa)
Geob_3392Lytic transglycosylase domain protein. (717 aa)
Geob_3486Peptidylprolyl cis-trans isomerase, putative. (526 aa)
Geob_3495Peptidylprolyl cis-trans isomerase, PpiC-type. (340 aa)
Geob_3712Peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type. (308 aa)
Geob_3734PolIIIAc domain protein. (204 aa)
Geob_3814Hypothetical protein. (336 aa)
mrcAPeptidoglycan transglycosylase and transpeptidase MrcA. (818 aa)
Geob_0347Outer membrane surface protein. (585 aa)
Geob_0438Hypothetical protein. (149 aa)
Geob_0442Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. (321 aa)
Geob_0131Peptidoglycan L,D-transpeptidase lipoprotein, YkuD family, TPR domain-containing. (323 aa)
Geob_0132Lipoprotein, putative. (106 aa)
gspJType II secretion system minor pseudopilin GspJ. (206 aa)
Geob_0273Phosphate-selective outer membrane channel. (413 aa)
Geob_0476Efflux pump, RND family, outer membrane protein. (445 aa)
mutM-2formamidopyrimidine-DNA glycosylase. (259 aa)
Geob_0298Peptidylprolyl cis-trans isomerase, PpiC-type. (296 aa)
rlpARare lipoprotein A-like double-psi beta-barrel domain protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (157 aa)
Geob_0931Amino acid aminotransferase, putative. (434 aa)
palPeptidoglycan-binding outer membrane lipoprotein Pal, OmpA family; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (194 aa)
Geob_1160Peptidoglycan-binding inner membrane lipoprotein YiaD, OmpA family. (228 aa)
Geob_1202Membrane transglycosylase and transpeptidase PBP1A. (675 aa)
Geob_1337Outer membrane channel, putative. (401 aa)
mutM-1formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (271 aa)
Geob_1582Protein of unknown function DUF327. (148 aa)
Geob_1610Amino acid aminotransferase, putative. (392 aa)
Geob_1748Hypothetical protein. (415 aa)
Geob_1822Amino acid aminotransferase, putative. (397 aa)
Geob_1859Lytic transglycosylase lipoprotein, putative. (215 aa)
lptDLipopolysaccharide biogenesis outer membrane protein LptD, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (688 aa)
Geob_1987Phosphate-selective outer membrane channel. (405 aa)
yaeTOuter membrane protein assembly complex protein YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (766 aa)
Geob_2098OmpH-like outer membrane protein, putative. (174 aa)
Geob_2139UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, putative. (556 aa)
lptELipopolysaccharide biogenesis outer membrane chaperone lipoprotein LptE, putative. (170 aa)
Geob_2378AMIN domain protein. (332 aa)
Geob_2381Lipoprotein, putative. (171 aa)
Geob_2392Metal-dependent phosphoesterase, PHP family. (280 aa)
Geob_2496Hypothetical protein. (352 aa)
pulMType II secretion system ATPase PulM, putative. (290 aa)
korB2-oxoglutarate:ferredoxin oxidoreductase, thiamin-diphosphate-binding subunit. (272 aa)
gspLType II secretion system protein GspL, putative. (440 aa)
Geob_0829Hypothetical protein. (129 aa)
yfiOOuter membrane protein assembly lipoprotein YfiO, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (244 aa)
Geob_0726Hypothetical protein. (262 aa)
Geob_0622Outer membrane surface lipoprotein. (414 aa)
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.