(11 nodes) Mixed, incl. Gdt1 family, and PmbA/TldA metallopeptidase domain 1 network (Synechococcus sp. RCC307)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pmbA	Putative modulator of DNA gyrase. (450 aa)
	tldD	Putative modulator of DNA gyrase. (472 aa)
	CAK28381.1	Uncharacterized conserved membrane protein. (168 aa)
	vacB	Transcription; Belongs to the RNR ribonuclease family. (751 aa)
	CAK28384.1	Uncharacterized conserved membrane protein. (105 aa)
	CAK28385.1	Uncharacterized conserved membrane protein. (110 aa)
	CAK28386.1	Fe-S cluster protein. (128 aa)
	eriC	Chloride channel protein; Inorganic ion transport and metabolism. (435 aa)
	recJ	Single-stranded DNA-specific exonuclease; DNA replication, recombination, and repair. (616 aa)
	CAK28389.1	Putative CbbY homolog (potential phosphonatase); Inorganic ion transport and metabolism. (230 aa)
	CAK28390.1	Conserved hypothetical protein. (114 aa)

Your Current Organism:

Synechococcus sp. RCC307

NCBI taxonomy Id: 316278
Other names: S. sp. RCC307, Synechococcus sp. MINSyn016-15m-01 substr. AC6A1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAK28381.1	CAK28384.1	SynRCC307_1478	SynRCC307_1481	Uncharacterized conserved membrane protein.	Uncharacterized conserved membrane protein.	0.645
CAK28381.1	CAK28385.1	SynRCC307_1478	SynRCC307_1482	Uncharacterized conserved membrane protein.	Uncharacterized conserved membrane protein.	0.645
CAK28381.1	CAK28386.1	SynRCC307_1478	SynRCC307_1483	Uncharacterized conserved membrane protein.	Fe-S cluster protein.	0.643
CAK28381.1	pmbA	SynRCC307_1478	SynRCC307_1474	Uncharacterized conserved membrane protein.	Putative modulator of DNA gyrase.	0.582
CAK28381.1	tldD	SynRCC307_1478	SynRCC307_1475	Uncharacterized conserved membrane protein.	Putative modulator of DNA gyrase.	0.561
CAK28381.1	vacB	SynRCC307_1478	SynRCC307_1480	Uncharacterized conserved membrane protein.	Transcription; Belongs to the RNR ribonuclease family.	0.790
CAK28384.1	CAK28381.1	SynRCC307_1481	SynRCC307_1478	Uncharacterized conserved membrane protein.	Uncharacterized conserved membrane protein.	0.645
CAK28384.1	CAK28385.1	SynRCC307_1481	SynRCC307_1482	Uncharacterized conserved membrane protein.	Uncharacterized conserved membrane protein.	0.839
CAK28384.1	CAK28386.1	SynRCC307_1481	SynRCC307_1483	Uncharacterized conserved membrane protein.	Fe-S cluster protein.	0.791
CAK28384.1	eriC	SynRCC307_1481	SynRCC307_1484	Uncharacterized conserved membrane protein.	Chloride channel protein; Inorganic ion transport and metabolism.	0.452
CAK28384.1	pmbA	SynRCC307_1481	SynRCC307_1474	Uncharacterized conserved membrane protein.	Putative modulator of DNA gyrase.	0.479
CAK28384.1	recJ	SynRCC307_1481	SynRCC307_1485	Uncharacterized conserved membrane protein.	Single-stranded DNA-specific exonuclease; DNA replication, recombination, and repair.	0.476
CAK28384.1	tldD	SynRCC307_1481	SynRCC307_1475	Uncharacterized conserved membrane protein.	Putative modulator of DNA gyrase.	0.448
CAK28384.1	vacB	SynRCC307_1481	SynRCC307_1480	Uncharacterized conserved membrane protein.	Transcription; Belongs to the RNR ribonuclease family.	0.645
CAK28385.1	CAK28381.1	SynRCC307_1482	SynRCC307_1478	Uncharacterized conserved membrane protein.	Uncharacterized conserved membrane protein.	0.645
CAK28385.1	CAK28384.1	SynRCC307_1482	SynRCC307_1481	Uncharacterized conserved membrane protein.	Uncharacterized conserved membrane protein.	0.839
CAK28385.1	CAK28386.1	SynRCC307_1482	SynRCC307_1483	Uncharacterized conserved membrane protein.	Fe-S cluster protein.	0.809
CAK28385.1	eriC	SynRCC307_1482	SynRCC307_1484	Uncharacterized conserved membrane protein.	Chloride channel protein; Inorganic ion transport and metabolism.	0.452
CAK28385.1	pmbA	SynRCC307_1482	SynRCC307_1474	Uncharacterized conserved membrane protein.	Putative modulator of DNA gyrase.	0.481
CAK28385.1	recJ	SynRCC307_1482	SynRCC307_1485	Uncharacterized conserved membrane protein.	Single-stranded DNA-specific exonuclease; DNA replication, recombination, and repair.	0.476