(6 nodes) Adhesin B, and ABC transporter, BtuC-like network (Synechococcus sp. CC9902)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABB25974.1	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family. (310 aa)
	ABB25975.1	ATPase. (255 aa)
	ABB25977.1	ABC transporter component, possibly Mn transport. (291 aa)
	ABB26328.1	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family. (305 aa)
	ABB26329.1	ATPase. (231 aa)
	ABB26330.1	ABC transporter component, possibly Mn transport. (258 aa)

Your Current Organism:

Synechococcus sp. CC9902

NCBI taxonomy Id: 316279
Other names: S. sp. CC9902

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABB25974.1	ABB25975.1	Syncc9902_1010	Syncc9902_1011	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ATPase.	0.996
ABB25974.1	ABB25977.1	Syncc9902_1010	Syncc9902_1013	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter component, possibly Mn transport.	0.996
ABB25974.1	ABB26329.1	Syncc9902_1010	Syncc9902_1365	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ATPase.	0.858
ABB25974.1	ABB26330.1	Syncc9902_1010	Syncc9902_1366	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter component, possibly Mn transport.	0.907
ABB25975.1	ABB25974.1	Syncc9902_1011	Syncc9902_1010	ATPase.	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	0.996
ABB25975.1	ABB25977.1	Syncc9902_1011	Syncc9902_1013	ATPase.	ABC transporter component, possibly Mn transport.	0.996
ABB25975.1	ABB26328.1	Syncc9902_1011	Syncc9902_1364	ATPase.	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	0.920
ABB25975.1	ABB26330.1	Syncc9902_1011	Syncc9902_1366	ATPase.	ABC transporter component, possibly Mn transport.	0.957
ABB25977.1	ABB25974.1	Syncc9902_1013	Syncc9902_1010	ABC transporter component, possibly Mn transport.	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	0.996
ABB25977.1	ABB25975.1	Syncc9902_1013	Syncc9902_1011	ABC transporter component, possibly Mn transport.	ATPase.	0.996
ABB25977.1	ABB26328.1	Syncc9902_1013	Syncc9902_1364	ABC transporter component, possibly Mn transport.	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	0.913
ABB25977.1	ABB26329.1	Syncc9902_1013	Syncc9902_1365	ABC transporter component, possibly Mn transport.	ATPase.	0.942
ABB25977.1	ABB26330.1	Syncc9902_1013	Syncc9902_1366	ABC transporter component, possibly Mn transport.	ABC transporter component, possibly Mn transport.	0.526
ABB26328.1	ABB25975.1	Syncc9902_1364	Syncc9902_1011	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ATPase.	0.920
ABB26328.1	ABB25977.1	Syncc9902_1364	Syncc9902_1013	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter component, possibly Mn transport.	0.913
ABB26328.1	ABB26329.1	Syncc9902_1364	Syncc9902_1365	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ATPase.	0.942
ABB26328.1	ABB26330.1	Syncc9902_1364	Syncc9902_1366	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter component, possibly Mn transport.	0.956
ABB26329.1	ABB25974.1	Syncc9902_1365	Syncc9902_1010	ATPase.	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	0.858
ABB26329.1	ABB25977.1	Syncc9902_1365	Syncc9902_1013	ATPase.	ABC transporter component, possibly Mn transport.	0.942
ABB26329.1	ABB26328.1	Syncc9902_1365	Syncc9902_1364	ATPase.	ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.	0.942