STRINGSTRING
Tcr_0028 Tcr_0028 Tcr_0066 Tcr_0066 Tcr_0090 Tcr_0090 Tcr_0109 Tcr_0109 Tcr_0135 Tcr_0135 Tcr_0166 Tcr_0166 Tcr_0197 Tcr_0197 Tcr_0226 Tcr_0226 Tcr_0227 Tcr_0227 Tcr_0379 Tcr_0379 Tcr_0380 Tcr_0380 Tcr_0457 Tcr_0457 Tcr_0770 Tcr_0770 Tcr_0776 Tcr_0776 Tcr_0785 Tcr_0785 Tcr_0861 Tcr_0861 Tcr_1021 Tcr_1021 Tcr_1108 Tcr_1108 Tcr_1143 Tcr_1143 Tcr_1150 Tcr_1150 Tcr_1222 Tcr_1222 Tcr_1383 Tcr_1383 Tcr_1483 Tcr_1483 Tcr_1820 Tcr_1820 Tcr_1911 Tcr_1911 Tcr_1913 Tcr_1913 Tcr_1920 Tcr_1920 Tcr_1924 Tcr_1924 Tcr_1931 Tcr_1931 Tcr_1937 Tcr_1937 Tcr_1984 Tcr_1984 Tcr_2008 Tcr_2008 Tcr_2068 Tcr_2068 Tcr_2131 Tcr_2131 Tcr_2179 Tcr_2179 Tcr_2180 Tcr_2180 Tcr_2190 Tcr_2190
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tcr_0028Diguanylate phosphodiesterase (EAL domain); PFAM: EAL; KEGG: vch:VC1641 hypothetical protein. (255 aa)
Tcr_0066Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ana:alr3761 two-component hybrid sensor and regulator. (721 aa)
Tcr_0090Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; KEGG: pst:PSPTO1346 sensory box/GGDEF domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein; SMART: PAC motif. (420 aa)
Tcr_0109TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mca:MCA0842 GGDEF domain protein. (461 aa)
Tcr_0135PFAM: response regulator receiver; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator. (132 aa)
Tcr_0166TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: gsu:GSU1037 sensory box/response regulator. (697 aa)
Tcr_0197Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; KEGG: pae:PA0285 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein; SMART: PAS. (507 aa)
Tcr_0226PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: sme:SMa1142 FixL-related histidine kinase. (1018 aa)
Tcr_0227Response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain); PFAM: EAL response regulator receiver; KEGG: lic:LIC11203 response regulator. (843 aa)
Tcr_0379Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein; KEGG: eba:ebA864 hypothetical protein. (540 aa)
Tcr_0380Diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; PFAM: conserved hypothetical protein; KEGG: ppu:PP4405 sensory box protein. (249 aa)
Tcr_0457TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rpa:RPA2476 putative diguanylate cyclase (GGDEF). (349 aa)
Tcr_0770Diguanylate phosphodiesterase (EAL domain); PFAM: EAL; KEGG: cvi:CV0657 hypothetical protein. (414 aa)
Tcr_0776TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: aae:aq_367 hypothetical protein. (864 aa)
Tcr_0785TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: wsu:WS1851 signal transduction response regulator-CheY like receiver and GGDEF domain. (502 aa)
Tcr_0861TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: vch:VCA0965 GGDEF family protein. (332 aa)
Tcr_1021TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO0796 GGDEF family protein. (300 aa)
Tcr_1108TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: rpa:RPA3132 putative diguanylate cyclase (GGDEF) with response regulator receiver domain. (454 aa)
Tcr_1143TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: wsu:WS1851 signal transduction response regulator-CheY like receiver and GGDEF domain. (532 aa)
Tcr_1150Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: mca:MCA1673 sensory box protein/GGDEF domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein EAL GAF; SMART: PAC motif. (1466 aa)
Tcr_1222TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: syn:sll0267 hypothetical protein. (815 aa)
Tcr_1383Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt; KEGG: bba:Bd3528 signal transduction histidine kinase. (642 aa)
Tcr_1483KEGG: syn:slr1753 hypothetical protein. (460 aa)
Tcr_1820TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein CBS domain containing protein EAL; KEGG: son:SO0555 hypothetical protein. (599 aa)
Tcr_1911PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator. (268 aa)
Tcr_1913KEGG: mac:MA2013 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAC motif. (1118 aa)
Tcr_1920Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; KEGG: wsu:WS0850 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein extracellular solute-binding protein, family 3; SMART: PAC motif. (893 aa)
Tcr_1924KEGG: wsu:WS0212 hybrid sensory histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 response regulator receiver ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; SMART: PAC motif. (901 aa)
Tcr_1931Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: eba:p1B362 sensory box protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein EAL; SMART: PAC motif. (1289 aa)
Tcr_1937TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein extracellular solute-binding protein, family 3; KEGG: wsu:WS0850 sensory transduction histidine kinase. (775 aa)
Tcr_1984TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: xcc:XCC1876 chemotaxis protein. (954 aa)
Tcr_2008TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: ppu:PP0672 sensory box protein. (703 aa)
Tcr_2068PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: gka:GK1468 hypothetical protein. (948 aa)
Tcr_2131TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: ppr:PBPRB0723 putative signal transduction protein. (501 aa)
Tcr_2179PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator. (348 aa)
Tcr_2180PAS/PAC sensor hybrid histidine kinase; KEGG: pae:PA3946 probable two-component sensor; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3 response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS. (1410 aa)
Tcr_2190Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: pae:PA0575 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein CBS domain containing protein EAL; SMART: PAC motif. (963 aa)
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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