35 items (Deinococcus ficus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFI_04725	Chlorite dismutase. (301 aa)
	DFI_04475	Uncharacterized protein. (255 aa)
	DFI_04470	Pept_C1 domain-containing protein. (546 aa)
	DFI_04465	Uncharacterized protein. (556 aa)
	DFI_04460	ABC transporter. (258 aa)
	DFI_04455	Uncharacterized protein. (260 aa)
	DFI_04450	RNA-binding protein. (190 aa)
	DFI_04445	Protease. (850 aa)
	DFI_01030	Uncharacterized protein. (165 aa)
	DFI_01025	ABC transporter ATP-binding protein. (300 aa)
	DFI_01020	Uncharacterized protein. (265 aa)
	DFI_13540	HTH gntR-type domain-containing protein. (143 aa)
	DFI_11710	ABC transporter. (319 aa)
	DFI_11705	ABC transporter permease. (290 aa)
	DFI_11330	GNAT family N-acetyltransferase. (180 aa)
	DFI_11325	TetR family transcriptional regulator. (207 aa)
	DFI_11320	ABC transporter domain-containing protein. (301 aa)
	DFI_11315	Uncharacterized protein. (376 aa)
	DFI_11310	Hydrolase. (226 aa)
	DFI_11305	Short-chain dehydrogenase. (235 aa)
	nrdR	Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (159 aa)
	DFI_10740	ABC transporter permease. (264 aa)
	DFI_10735	ABC transporter ATP-binding protein. (312 aa)
	DFI_10725	Uncharacterized protein. (110 aa)
	DFI_17845	PadR family transcriptional regulator. (190 aa)
	DFI_18215	Uncharacterized protein. (194 aa)
	DFI_16530	Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (249 aa)
	DFI_16535	Cytochrome c domain-containing protein. (172 aa)
	DFI_16540	Nitrous-oxide reductase. (623 aa)
	DFI_16545	Uncharacterized protein. (203 aa)
	DFI_16550	Uncharacterized protein. (428 aa)
	DFI_16555	Copper ABC transporter permease. (266 aa)
	DFI_16560	ABC transporter ATP-binding protein. (232 aa)
	DFI_16565	YtkA domain-containing protein. (122 aa)
	DFI_16570	Thioredoxin domain-containing protein. (351 aa)

Your Current Organism:

Deinococcus ficus

NCBI taxonomy Id: 317577
Other names: CCUG 51391, CIP 108832, D. ficus, DSM 17424 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], DSM 19119, Deinococcus ficus Lai et al. 2006 emend. Kampfer 2009, Deinococcus mumbaiensis, Deinococcus mumbaiensis Shashidhar and Bandekar 2006, Deinococcus sp. 2009, Deinococcus sp. CC-FR2-10, Deinococcus sp. UK, MTCC 7297 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], strain CC-FR2-10, strain CON-1 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]]

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFI_01020	DFI_01025	GCA_000419625_00976	GCA_000419625_00975	Uncharacterized protein.	ABC transporter ATP-binding protein.	0.880
DFI_01020	DFI_01030	GCA_000419625_00976	GCA_000419625_00974	Uncharacterized protein.	Uncharacterized protein.	0.781
DFI_01025	DFI_01020	GCA_000419625_00975	GCA_000419625_00976	ABC transporter ATP-binding protein.	Uncharacterized protein.	0.880
DFI_01025	DFI_01030	GCA_000419625_00975	GCA_000419625_00974	ABC transporter ATP-binding protein.	Uncharacterized protein.	0.835
DFI_01025	DFI_10740	GCA_000419625_00975	GCA_000419625_01777	ABC transporter ATP-binding protein.	ABC transporter permease.	0.548
DFI_01025	DFI_11315	GCA_000419625_00975	GCA_000419625_01662	ABC transporter ATP-binding protein.	Uncharacterized protein.	0.928
DFI_01025	DFI_11705	GCA_000419625_00975	GCA_000419625_01585	ABC transporter ATP-binding protein.	ABC transporter permease.	0.590
DFI_01025	DFI_16540	GCA_000419625_00975	GCA_000419625_03371	ABC transporter ATP-binding protein.	Nitrous-oxide reductase.	0.453
DFI_01025	DFI_16545	GCA_000419625_00975	GCA_000419625_03372	ABC transporter ATP-binding protein.	Uncharacterized protein.	0.454
DFI_01025	DFI_16550	GCA_000419625_00975	GCA_000419625_03373	ABC transporter ATP-binding protein.	Uncharacterized protein.	0.403
DFI_01025	DFI_16555	GCA_000419625_00975	GCA_000419625_03374	ABC transporter ATP-binding protein.	Copper ABC transporter permease.	0.563
DFI_01030	DFI_01020	GCA_000419625_00974	GCA_000419625_00976	Uncharacterized protein.	Uncharacterized protein.	0.781
DFI_01030	DFI_01025	GCA_000419625_00974	GCA_000419625_00975	Uncharacterized protein.	ABC transporter ATP-binding protein.	0.835
DFI_04445	DFI_04450	GCA_000419625_00248	GCA_000419625_00247	Protease.	RNA-binding protein.	0.680
DFI_04445	DFI_04455	GCA_000419625_00248	GCA_000419625_00246	Protease.	Uncharacterized protein.	0.456
DFI_04445	DFI_04460	GCA_000419625_00248	GCA_000419625_00245	Protease.	ABC transporter.	0.400
DFI_04450	DFI_04445	GCA_000419625_00247	GCA_000419625_00248	RNA-binding protein.	Protease.	0.680
DFI_04450	DFI_04455	GCA_000419625_00247	GCA_000419625_00246	RNA-binding protein.	Uncharacterized protein.	0.744
DFI_04450	DFI_04460	GCA_000419625_00247	GCA_000419625_00245	RNA-binding protein.	ABC transporter.	0.646
DFI_04450	DFI_04465	GCA_000419625_00247	GCA_000419625_00244	RNA-binding protein.	Uncharacterized protein.	0.646

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