STRINGSTRING
DFI_04400 DFI_04400 GCA_000419625_03860 GCA_000419625_03860 imuB imuB dnaE2 dnaE2 GCA_000419625_03603 GCA_000419625_03603 GCA_000419625_03557 GCA_000419625_03557 sat sat DFI_17025 DFI_17025 DFI_16995 DFI_16995 DFI_16820 DFI_16820 GCA_000419625_03407 GCA_000419625_03407 DFI_16590 DFI_16590 DFI_18035 DFI_18035 DFI_17860 DFI_17860 DFI_17790 DFI_17790 dinB dinB DFI_15205 DFI_15205 DFI_15320 DFI_15320 DFI_16185 DFI_16185 DFI_16510 DFI_16510 DFI_13985 DFI_13985 glmU glmU DFI_06400 DFI_06400 DFI_06495 DFI_06495 glgC glgC DFI_07685 DFI_07685 DFI_09435 DFI_09435 DFI_10090 DFI_10090 pnp pnp DFI_10500 DFI_10500 selO selO DFI_10720 DFI_10720 DFI_10765 DFI_10765 DFI_11115 DFI_11115 DFI_11545 DFI_11545 DFI_11920 DFI_11920 DFI_11970 DFI_11970 dnaX dnaX DFI_13490 DFI_13490 DFI_13635 DFI_13635 DFI_00010 DFI_00010 DFI_00150 DFI_00150 ispD ispD DFI_00220 DFI_00220 DFI_00230 DFI_00230 DFI_00985 DFI_00985 DFI_01215 DFI_01215 mobA mobA DFI_01440 DFI_01440 dnaG dnaG rpoZ rpoZ DFI_01845 DFI_01845 rph rph DFI_01890 DFI_01890 DFI_02040 DFI_02040 cobQ cobQ rpoA rpoA coaD coaD dacA dacA rpoC rpoC rpoB rpoB DFI_04955 DFI_04955 polA polA DFI_05555 DFI_05555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DFI_04400tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (437 aa)
GCA_000419625_03860annotation not available (363 aa)
imuBPutative Y-family DNA polymerase. (417 aa)
dnaE2DNA-directed DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. (1057 aa)
GCA_000419625_03603annotation not available (371 aa)
GCA_000419625_03557annotation not available (297 aa)
satSulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. (391 aa)
DFI_17025GGDEF domain-containing protein. (512 aa)
DFI_16995GGDEF domain-containing protein. (364 aa)
DFI_16820Glucose-1-phosphate thymidylyltransferase. (355 aa)
GCA_000419625_03407annotation not available (551 aa)
DFI_16590GGDEF domain-containing protein. (341 aa)
DFI_18035Glucose-1-phosphate cytidylyltransferase. (256 aa)
DFI_17860Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family. (384 aa)
DFI_17790Glucose-1-phosphate thymidylyltransferase. (352 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (356 aa)
DFI_15205GGDEF domain-containing protein. (391 aa)
DFI_15320GGDEF domain-containing protein. (361 aa)
DFI_16185GGDEF domain-containing protein. (368 aa)
DFI_16510GGDEF domain-containing protein. (364 aa)
DFI_13985GGDEF domain-containing protein. (365 aa)
glmUGlucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (490 aa)
DFI_06400DNA polymerase/3'-5' exonuclease PolX. (568 aa)
DFI_06495Phosphatidate cytidylyltransferase; Belongs to the CDS family. (276 aa)
glgCGlucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (413 aa)
DFI_07685GGDEF domain-containing protein. (355 aa)
DFI_09435GGDEF domain-containing protein. (371 aa)
DFI_10090YrdC-like domain-containing protein; Belongs to the SUA5 family. (201 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (771 aa)
DFI_10500Glucose-1-phosphate adenylyltransferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (442 aa)
selOProtein adenylyltransferase SelO; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (503 aa)
DFI_10720Riboflavin biosynthesis protein; Belongs to the ribF family. (300 aa)
DFI_10765DNA polymerase III subunit epsilon. (183 aa)
DFI_11115tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (371 aa)
DFI_11545Cytidyltransferase-like domain-containing protein. (330 aa)
DFI_11920GGDEF domain-containing protein. (384 aa)
DFI_11970GGDEF domain-containing protein. (476 aa)
dnaXDNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (790 aa)
DFI_13490GGDEF domain-containing protein. (378 aa)
DFI_13635NTP_transf_2 domain-containing protein. (262 aa)
DFI_00010Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] (362 aa)
DFI_00150Molybdopterin biosynthesis protein MoeB. (257 aa)
ispD2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). (231 aa)
DFI_00220DNA-directed DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. (1040 aa)
DFI_00230UmuC domain-containing protein. (394 aa)
DFI_00985DNA polymerase III subunit alpha. (1335 aa)
DFI_01215DNA polymerase III. (323 aa)
mobAProbable molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor. (196 aa)
DFI_01440GGDEF domain-containing protein. (202 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (588 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (99 aa)
DFI_01845Nucleotide-diphospho-sugar transferase. (262 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (252 aa)
DFI_01890GGDEF domain-containing protein. (343 aa)
DFI_02040Adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase. (173 aa)
cobQCobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (466 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (335 aa)
coaDPhosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (177 aa)
dacADiadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (299 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1541 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1147 aa)
DFI_04955Nucleotidyl transferase. (345 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (936 aa)
DFI_05555GGDEF domain-containing protein. (335 aa)
Your Current Organism:
Deinococcus ficus
NCBI taxonomy Id: 317577
Other names: CCUG 51391, CIP 108832, D. ficus, DSM 17424 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], DSM 19119, Deinococcus ficus Lai et al. 2006 emend. Kampfer 2009, Deinococcus mumbaiensis, Deinococcus mumbaiensis Shashidhar and Bandekar 2006, Deinococcus sp. 2009, Deinococcus sp. CC-FR2-10, Deinococcus sp. UK, MTCC 7297 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], strain CC-FR2-10, strain CON-1 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]]
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