STRINGSTRING
DFI_03570 DFI_03570 DFI_02460 DFI_02460 DFI_02270 DFI_02270 DFI_02050 DFI_02050 DFI_13485 DFI_13485 hisC hisC DFI_10830 DFI_10830 DFI_08765 DFI_08765 DFI_08440 DFI_08440 DFI_08260 DFI_08260
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DFI_03570Succinyldiaminopimelate aminotransferase. (390 aa)
DFI_024608-amino-7-oxononanoate synthase. (394 aa)
DFI_022702-aminoadipate aminotransferase. (382 aa)
DFI_02050Histidinol phosphate aminotransferase. (334 aa)
DFI_13485Aminotransferase. (375 aa)
hisCHistidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (360 aa)
DFI_10830Aminotransferase class I. (393 aa)
DFI_08765GntR family transcriptional regulator. (473 aa)
DFI_08440GntR family transcriptional regulator. (490 aa)
DFI_08260Aminotransferase. (393 aa)
Your Current Organism:
Deinococcus ficus
NCBI taxonomy Id: 317577
Other names: CCUG 51391, CIP 108832, D. ficus, DSM 17424 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], DSM 19119, Deinococcus ficus Lai et al. 2006 emend. Kampfer 2009, Deinococcus mumbaiensis, Deinococcus mumbaiensis Shashidhar and Bandekar 2006, Deinococcus sp. 2009, Deinococcus sp. CC-FR2-10, Deinococcus sp. UK, MTCC 7297 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], strain CC-FR2-10, strain CON-1 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]]
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