STRINGSTRING
DFI_10285 DFI_10285 DFI_04640 DFI_04640 DFI_03570 DFI_03570 DFI_02460 DFI_02460 DFI_02270 DFI_02270 DFI_02050 DFI_02050 gcvP gcvP DFI_13485 DFI_13485 DFI_13110 DFI_13110 glyA glyA DFI_11270 DFI_11270 hisC hisC DFI_10830 DFI_10830 tnaA tnaA tpl tpl DFI_10585 DFI_10585 DFI_17520 DFI_17520 DFI_17830 DFI_17830 DFI_17735 DFI_17735 kynU kynU DFI_17650 DFI_17650 DFI_06850 DFI_06850 DFI_07035 DFI_07035 DFI_07150 DFI_07150 DFI_07895 DFI_07895 DFI_08260 DFI_08260 lysJ lysJ DFI_08965 DFI_08965 DFI_09590 DFI_09590 hemL hemL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DFI_10285Cysteine desulfurase-like protein. (399 aa)
DFI_04640O-acetylhomoserine aminocarboxypropyltransferase. (456 aa)
DFI_03570Succinyldiaminopimelate aminotransferase. (390 aa)
DFI_024608-amino-7-oxononanoate synthase. (394 aa)
DFI_022702-aminoadipate aminotransferase. (382 aa)
DFI_02050Histidinol phosphate aminotransferase. (334 aa)
gcvPGlycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (952 aa)
DFI_13485Aminotransferase. (375 aa)
DFI_13110Methionine gamma-lyase. (396 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (408 aa)
DFI_11270Cysteine synthase. (416 aa)
hisCHistidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (360 aa)
DFI_10830Aminotransferase class I. (393 aa)
tnaATryptophanase; Belongs to the beta-eliminating lyase family. (468 aa)
tplTyrosine phenol-lyase. (471 aa)
DFI_10585Aminopeptidase. (430 aa)
DFI_17520Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (411 aa)
DFI_17830Aminotransferase. (533 aa)
DFI_17735Uncharacterized protein. (360 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (418 aa)
DFI_17650Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (411 aa)
DFI_06850Aminotransferase class V. (387 aa)
DFI_07035Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (485 aa)
DFI_07150Aminotransferase V. (393 aa)
DFI_07895Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (429 aa)
DFI_08260Aminotransferase. (393 aa)
lysJ[LysW]-aminoadipate semialdehyde transaminase; Catalyzes the transfer of the amino group of L-glutamate to [LysW]-aminoadipate 6-semialdehyde, generating [LysW]-gamma-L-lysine. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily. (416 aa)
DFI_08965Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (464 aa)
DFI_09590Cysteine desulfurase NifS. (377 aa)
hemLGlutamate-1-semialdehyde 2,1-aminomutase. (449 aa)
Your Current Organism:
Deinococcus ficus
NCBI taxonomy Id: 317577
Other names: CCUG 51391, CIP 108832, D. ficus, DSM 17424 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], DSM 19119, Deinococcus ficus Lai et al. 2006 emend. Kampfer 2009, Deinococcus mumbaiensis, Deinococcus mumbaiensis Shashidhar and Bandekar 2006, Deinococcus sp. 2009, Deinococcus sp. CC-FR2-10, Deinococcus sp. UK, MTCC 7297 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], strain CC-FR2-10, strain CON-1 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]]
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