STRINGSTRING
hisC hisC tpl tpl DFI_08260 DFI_08260 DFI_05885 DFI_05885 DFI_17735 DFI_17735 gabD gabD DFI_17445 DFI_17445 DFI_17460 DFI_17460 DFI_17470 DFI_17470 DFI_17480 DFI_17480
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hisCHistidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (360 aa)
tplTyrosine phenol-lyase. (471 aa)
DFI_08260Aminotransferase. (393 aa)
DFI_05885Flavin monoamine oxidase. (532 aa)
DFI_17735Uncharacterized protein. (360 aa)
gabDNAD-dependent succinate-semialdehyde dehydrogenase. (482 aa)
DFI_174452-oxo-hepta-3-ene-1,7-dioic acid hydratase. (277 aa)
DFI_174604-hydroxyphenylacetate 3-monooxygenase, oxygenase component. (507 aa)
DFI_174705-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (522 aa)
DFI_174802-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (266 aa)
Your Current Organism:
Deinococcus ficus
NCBI taxonomy Id: 317577
Other names: CCUG 51391, CIP 108832, D. ficus, DSM 17424 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], DSM 19119, Deinococcus ficus Lai et al. 2006 emend. Kampfer 2009, Deinococcus mumbaiensis, Deinococcus mumbaiensis Shashidhar and Bandekar 2006, Deinococcus sp. 2009, Deinococcus sp. CC-FR2-10, Deinococcus sp. UK, MTCC 7297 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], strain CC-FR2-10, strain CON-1 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]]
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