STRINGSTRING
metG metG DFI_04220 DFI_04220 DFI_00285 DFI_00285 DFI_13110 DFI_13110 DFI_10830 DFI_10830 DFI_07780 DFI_07780 DFI_13745 DFI_13745 sat sat DFI_17520 DFI_17520
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
metGMethionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. (666 aa)
DFI_04220Thioredoxin reductase. (321 aa)
DFI_00285Pyridine nucleotide-disulfide oxidoreductase. (339 aa)
DFI_13110Methionine gamma-lyase. (396 aa)
DFI_10830Aminotransferase class I. (393 aa)
DFI_07780Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1221 aa)
DFI_13745Methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (518 aa)
satSulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. (391 aa)
DFI_17520Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (411 aa)
Your Current Organism:
Deinococcus ficus
NCBI taxonomy Id: 317577
Other names: CCUG 51391, CIP 108832, D. ficus, DSM 17424 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], DSM 19119, Deinococcus ficus Lai et al. 2006 emend. Kampfer 2009, Deinococcus mumbaiensis, Deinococcus mumbaiensis Shashidhar and Bandekar 2006, Deinococcus sp. 2009, Deinococcus sp. CC-FR2-10, Deinococcus sp. UK, MTCC 7297 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]], strain CC-FR2-10, strain CON-1 [[Deinococcus mumbaiensis Shashidhar and Bandekar 2006]]
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