(40 nodes) Mixed, incl. TonB dependent receptor, and Protein transport network (Shewanella denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Sden_0434	TonB-like protein. (302 aa)
	Sden_0573	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (93 aa)
	Sden_0621	TonB-dependent receptor. (686 aa)
	Sden_0636	Putative lipoprotein. (946 aa)
	Sden_0637	TonB-dependent receptor. (916 aa)
	Sden_0729	TonB-dependent receptor, plug. (656 aa)
	hmuV	ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (254 aa)
	Sden_0785	Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (340 aa)
	Sden_0786	Periplasmic binding protein. (327 aa)
	Sden_0787	Biopolymer transport protein ExbD/TolR. (139 aa)
	Sden_0788	MotA/TolQ/ExbB proton channel. (264 aa)
	Sden_0789	TonB-like protein. (269 aa)
	Sden_0790	TonB-dependent haem/haemoglobin receptor. (690 aa)
	Sden_0791	Heme utilization protein HuvX. (184 aa)
	Sden_0792	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (176 aa)
	Sden_0901	TonB-dependent receptor. (735 aa)
	Sden_0905	TonB-like protein. (203 aa)
	Sden_1116	ABC transporter related. (307 aa)
	Sden_1117	Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (349 aa)
	Sden_2150	Conserved hypothetical protein. (271 aa)
	Sden_2151	Periplasmic protein-like protein. (166 aa)
	Sden_2152	PepSY-associated TM helix. (191 aa)
	Sden_2153	TPR repeat. (448 aa)
	Sden_2154	Hypothetical protein. (203 aa)
	Sden_2155	Biopolymer transport protein ExbD/TolR. (134 aa)
	Sden_2156	MotA/TolQ/ExbB proton channel. (178 aa)
	Sden_2157	MotA/TolQ/ExbB proton channel. (488 aa)
	Sden_2158	Hypothetical protein. (250 aa)
	Sden_2159	TonB-dependent receptor. (684 aa)
	Sden_2160	Protein of unknown function DUF124. (264 aa)
	Sden_2172	TonB-dependent receptor, plug. (687 aa)
	Sden_2420	Tetratricopeptide region. (415 aa)
	Sden_2421	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (207 aa)
	Sden_2422	Biopolymer transport protein ExbD/TolR. (134 aa)
	Sden_2423	MotA/TolQ/ExbB proton channel. (175 aa)
	Sden_2424	MotA/TolQ/ExbB proton channel. (450 aa)
	Sden_2425	Conserved hypothetical protein. (260 aa)
	Sden_2503	TonB-dependent haem/haemoglobin receptor. (744 aa)
	Sden_2610	TonB-dependent receptor. (990 aa)
	Sden_2853	Periplasmic binding protein. (294 aa)

Your Current Organism:

Shewanella denitrificans

NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Sden_0434	Sden_0637	Sden_0434	Sden_0637	TonB-like protein.	TonB-dependent receptor.	0.740
Sden_0434	Sden_0729	Sden_0434	Sden_0729	TonB-like protein.	TonB-dependent receptor, plug.	0.749
Sden_0434	Sden_0787	Sden_0434	Sden_0787	TonB-like protein.	Biopolymer transport protein ExbD/TolR.	0.781
Sden_0434	Sden_0788	Sden_0434	Sden_0788	TonB-like protein.	MotA/TolQ/ExbB proton channel.	0.653
Sden_0434	Sden_0901	Sden_0434	Sden_0901	TonB-like protein.	TonB-dependent receptor.	0.740
Sden_0434	Sden_2155	Sden_0434	Sden_2155	TonB-like protein.	Biopolymer transport protein ExbD/TolR.	0.781
Sden_0434	Sden_2156	Sden_0434	Sden_2156	TonB-like protein.	MotA/TolQ/ExbB proton channel.	0.653
Sden_0434	Sden_2157	Sden_0434	Sden_2157	TonB-like protein.	MotA/TolQ/ExbB proton channel.	0.653
Sden_0434	Sden_2422	Sden_0434	Sden_2422	TonB-like protein.	Biopolymer transport protein ExbD/TolR.	0.812
Sden_0434	Sden_2423	Sden_0434	Sden_2423	TonB-like protein.	MotA/TolQ/ExbB proton channel.	0.739
Sden_0434	Sden_2424	Sden_0434	Sden_2424	TonB-like protein.	MotA/TolQ/ExbB proton channel.	0.709
Sden_0434	Sden_2503	Sden_0434	Sden_2503	TonB-like protein.	TonB-dependent haem/haemoglobin receptor.	0.740
Sden_0434	Sden_2610	Sden_0434	Sden_2610	TonB-like protein.	TonB-dependent receptor.	0.931
Sden_0573	Sden_0621	Sden_0573	Sden_0621	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	TonB-dependent receptor.	0.406
Sden_0573	Sden_0636	Sden_0573	Sden_0636	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	Putative lipoprotein.	0.535
Sden_0573	Sden_0637	Sden_0573	Sden_0637	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	TonB-dependent receptor.	0.864
Sden_0573	Sden_0729	Sden_0573	Sden_0729	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	TonB-dependent receptor, plug.	0.751
Sden_0573	Sden_0787	Sden_0573	Sden_0787	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	Biopolymer transport protein ExbD/TolR.	0.781
Sden_0573	Sden_0788	Sden_0573	Sden_0788	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	MotA/TolQ/ExbB proton channel.	0.654
Sden_0573	Sden_0790	Sden_0573	Sden_0790	TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	TonB-dependent haem/haemoglobin receptor.	0.406

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