STRINGSTRING
Pden_1622 Pden_1622 Pden_1623 Pden_1623 Pden_2109 Pden_2109 Pden_2110 Pden_2110 Pden_2111 Pden_2111 fliE fliE Pden_2113 Pden_2113 Pden_2114 Pden_2114 Pden_2115 Pden_2115 Pden_2116 Pden_2116 flgH flgH Pden_2118 Pden_2118 Pden_2626 Pden_2626 Pden_2627 Pden_2627 Pden_2628 Pden_2628 Pden_2630 Pden_2630 Pden_2645 Pden_2645 Pden_2646 Pden_2646 Pden_2647 Pden_2647 Pden_2648 Pden_2648 Pden_2649 Pden_2649 Pden_2651 Pden_2651 fliP fliP Pden_2695 Pden_2695 Pden_2696 Pden_2696 Pden_2697 Pden_2697 Pden_2698 Pden_2698 flgI flgI Pden_4464 Pden_4464
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pden_1622Hypothetical protein; KEGG: rde:RD1_0163 flagellar hook-length control protein. (397 aa)
Pden_1623Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. (221 aa)
Pden_2109ATPase, FliI/YscN family; KEGG: rsp:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase. (444 aa)
Pden_2110KEGG: rsp:RSP_1331 flagellar basal-body rod protein FlgB. (129 aa)
Pden_2111PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_1330 putative flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. (130 aa)
fliEPFAM: flagellar hook-basal body complex protein FliE; KEGG: rsp:RSP_1329 putative flagellar hook-basal body complex protein. (92 aa)
Pden_2113PFAM: export protein FliQ, family 3; KEGG: rsp:RSP_1328 flagellar biosynthetic protein FliQ. (88 aa)
Pden_2114PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_1327 putative flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family. (238 aa)
Pden_2115TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rde:RD1_0258 flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family. (261 aa)
Pden_2116SAF domain; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (138 aa)
flgHFlagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (250 aa)
Pden_2118KEGG: jan:Jann_4190 hypothetical protein. (177 aa)
Pden_2626PFAM: type III secretion exporter; KEGG: sil:SPO0172 flagellar biosynthetic protein FlhB. (368 aa)
Pden_2627KEGG: sil:SPO0171 flagellar biosynthetic protein FliR. (252 aa)
Pden_2628PFAM: type III secretion FHIPEP protein; KEGG: sil:SPO0170 flagellar biosynthesis protein FlhA. (694 aa)
Pden_2630KEGG: rsp:RSP_1316 flagellar motor protein. (166 aa)
Pden_2645KEGG: sit:TM1040_2951 chemotaxis protein MotA. (148 aa)
Pden_2646KEGG: rsp:RSP_1315 hypothetical protein. (180 aa)
Pden_2647Hypothetical protein; KEGG: sit:TM1040_2949 conserved hypothetical protein. (115 aa)
Pden_2648Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (160 aa)
Pden_2649Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (526 aa)
Pden_2651PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_1310 putative flagellar motor switch protein FliN/FliY. (85 aa)
fliPFlagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (241 aa)
Pden_2695KEGG: rsp:RSP_1302 putative chemotaxis MotB protein. (266 aa)
Pden_2696PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_1303 putative flagellar hook protein. (446 aa)
Pden_2697TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rde:RD1_0580 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. (486 aa)
Pden_2698Putative flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (339 aa)
flgIFlagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (366 aa)
Pden_4464PFAM: flagellar motor switch protein FliG; KEGG: rsp:RSP_2220 possible flagellar motor switch protein (FliG). (351 aa)
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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