STRINGSTRING
Pden_0495 Pden_0495 Pden_0496 Pden_0496 Pden_0819 Pden_0819 Pden_0820 Pden_0820 Pden_3719 Pden_3719
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pden_0495PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rde:RD1_0413 response regulator. (423 aa)
Pden_0496PFAM: Hpt domain protein; KEGG: sit:TM1040_2886 Hpt protein. (116 aa)
Pden_0819KEGG: jan:Jann_4052 putative anti-sigma regulatory factor (serine/threonine protein kinase). (185 aa)
Pden_0820Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rsp:RSP_1501 antisigma-factor antagonist (STAS) domain protein; Belongs to the anti-sigma-factor antagonist family. (121 aa)
Pden_3719PFAM: Heme NO binding domain protein; KEGG: rsp:RSP_6114 hypothetical protein. (189 aa)
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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