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Pden_1841 Pden_1841 Pden_1842 Pden_1842 Pden_1843 Pden_1843 Pden_1844 Pden_1844 ccoP ccoP Pden_1846 Pden_1846 Pden_1847 Pden_1847 Pden_1848 Pden_1848 Pden_3636 Pden_3636 Pden_3645 Pden_3645 Pden_4105 Pden_4105
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pden_1841TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: sit:TM1040_2537 cytochrome oxidase maturation protein, cbb3-type. (52 aa)
Pden_1842Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rsp:RSP_0690 copper-translocating P-type ATPase, RdxI. (732 aa)
Pden_1843PFAM: FixH family protein; KEGG: rsp:RSP_0691 RdxH. (154 aa)
Pden_1844TIGRFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rsp:RSP_0692 iron-sulfur cluster-binding protein. (485 aa)
ccoPCytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. CcoP subunit is required for transferring electrons from donor cytochrome c via its heme groups to CcoO subunit. From there, electrons are shuttled to the catalytic binuclear center of CcoN subunit where oxygen reduction takes place. The complex also functions as a proton pump. (349 aa)
Pden_1846PFAM: Cbb3-type cytochrome oxidase component; KEGG: sit:TM1040_2543 Cbb3-type cytochrome oxidase component. (62 aa)
Pden_1847TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rde:RD1_1271 cytochrome c oxidase, cbb3-type, subunit II. (241 aa)
Pden_1848TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rsp:RSP_0696 Cbb3-type cytochrome oxidase CcoN subunit; Belongs to the heme-copper respiratory oxidase family. (539 aa)
Pden_3636PFAM: OmpW family protein; KEGG: xcb:XC_0970 outer membrane protein. (211 aa)
Pden_3645PFAM: protein of unknown function DUF465; KEGG: bms:BRA0175 hypothetical protein. (80 aa)
Pden_4105KEGG: sil:SPO2944 hypothetical protein. (62 aa)
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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