STRINGSTRING
Pden_1594 Pden_1594 ppk ppk Pden_1835 Pden_1835 Pden_3709 Pden_3709 Pden_4500 Pden_4500
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pden_1594PFAM: Polyphosphate kinase; KEGG: rde:RD1_2042 polyphosphate kinase. (433 aa)
ppkPolyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (721 aa)
Pden_1835PFAM: protein of unknown function DUF344; KEGG: rsp:RSP_0766 hypothetical protein. (340 aa)
Pden_3709PFAM: protein of unknown function DUF344; KEGG: sme:SMa0172 hypothetical protein. (302 aa)
Pden_4500PFAM: protein of unknown function DUF344; KEGG: rsp:RSP_0013 hypothetical protein. (307 aa)
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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