STRINGSTRING
Pden_0323 Pden_0323 Pden_0551 Pden_0551 Pden_0611 Pden_0611 Pden_1254 Pden_1254 Pden_1464 Pden_1464 Pden_1604 Pden_1604 Pden_1719 Pden_1719 Pden_2026 Pden_2026 Pden_2178 Pden_2178 ilvE ilvE Pden_2663 Pden_2663 Pden_2755 Pden_2755 Pden_2870 Pden_2870 Pden_2871 Pden_2871 Pden_2906 Pden_2906 Pden_2907 Pden_2907 Pden_3049 Pden_3049 Pden_3211 Pden_3211 Pden_3216 Pden_3216 Pden_3226 Pden_3226 Pden_3228 Pden_3228 Pden_3256 Pden_3256 Pden_3260 Pden_3260 Pden_3633 Pden_3633 Pden_3637 Pden_3637 Pden_3639 Pden_3639 Pden_3641 Pden_3641 Pden_3642 Pden_3642 Pden_3681 Pden_3681 Pden_3684 Pden_3684 Pden_3688 Pden_3688 Pden_3898 Pden_3898 Pden_4003 Pden_4003 Pden_4479 Pden_4479 Pden_4482 Pden_4482
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
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Pden_0323PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: atc:AGR_L_1864 biotin carboxylase protein A2. (588 aa)
Pden_0551TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: sil:SPO0340 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase. (464 aa)
Pden_0611TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: rsp:RSP_2968 dihydrolipoamide dehydrogenase. (463 aa)
Pden_1254PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3401 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (481 aa)
Pden_1464PFAM: aminotransferase, class IV; KEGG: rru:Rru_A2223 branched-chain amino acid aminotransferase I. (305 aa)
Pden_1604PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: sme:SMb20020 putative pyruvate dehydrogenase E1 component,alpha and beta subunits protein. (693 aa)
Pden_1719PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr0509 malonyl-CoA synthase. (503 aa)
Pden_2026KEGG: rsp:RSP_0745 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
Pden_2178methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sit:TM1040_0637 glyoxalase/bleomycin resistance protein/dioxygenase. (134 aa)
ilvEBranched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (289 aa)
Pden_2663KEGG: sil:SPO0142 beta-ketothiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Pden_2755PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_1507 aldehyde dehydrogenase. (483 aa)
Pden_2870KEGG: sil:SPO2918 acetyl-CoA acyltransferase/thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
Pden_2871PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rsp:RSP_2196 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase. (727 aa)
Pden_2906PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bms:BRA0447 acyl-CoA dehydrogenase. (375 aa)
Pden_2907KEGG: bms:BRA0448 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Pden_3049PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: aeh:Mlg_2596 dehydrogenase, E1 component. (617 aa)
Pden_3211PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_1577 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (477 aa)
Pden_3216Tartronate semialdehyde reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dar:Daro_3339 6-phosphogluconate dehydrogenase, NAD-binding. (309 aa)
Pden_3226KEGG: rru:Rru_A1310 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (373 aa)
Pden_3228PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C7342 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (499 aa)
Pden_3256Tartronate semialdehyde reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sth:STH938 3-hydroxyisobutyrate dehydrogenase. (309 aa)
Pden_3260PFAM: aldehyde dehydrogenase; KEGG: dra:DRA0126 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (470 aa)
Pden_3633PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sil:SPO2793 isovaleryl-CoA dehydrogenase. (386 aa)
Pden_3637Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: sit:TM1040_0737 propionyl-CoA carboxylase. (534 aa)
Pden_36393-methylcrotonoyl-CoA carboxylase, alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: jan:Jann_1147 carbamoyl-phosphate synthase L chain, ATP-binding. (642 aa)
Pden_3641hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: jan:Jann_1149 hydroxymethylglutaryl-CoA lyase. (289 aa)
Pden_3642PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sil:SPO2787 enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Pden_3681KEGG: rsp:RSP_2192 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein. (714 aa)
Pden_3684PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: sil:SPO1101 propionyl-CoA carboxylase, alpha subunit. (685 aa)
Pden_3688PFAM: carboxyl transferase; KEGG: rsp:RSP_2189 propionyl-CoA carboxylase beta chain. (510 aa)
Pden_3898PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_0313 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (776 aa)
Pden_40033-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rsp:RSP_2846 putative 3-hydroxyisobutyrate dehydrogenase. (288 aa)
Pden_4479TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sit:TM1040_1106 methylmalonate-semialdehyde dehydrogenase. (499 aa)
Pden_4482TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rsp:RSP_0154 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (291 aa)
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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