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| | gfa | Glutathione-dependent formaldehyde-activating, GFA; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (194 aa) |
| | Pden_0016 | PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_2576 alcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (375 aa) |
| | fghA | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. Hydrolyzes S-formylglutathione to glutathione and formate (Probable). (279 aa) |
| | Pden_0020 | PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2578 putative pqq dehydrogenase protein. (600 aa) |
| | Pden_0043 | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpa:RPA4047 haloacid dehalogenase-like hydrolase. (200 aa) |
| | Pden_0054 | KEGG: sil:SPO3289 phenylacetate-CoA ligase, putative. (405 aa) |
| | Pden_0167 | Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel domain protein; KEGG: mes:Meso_3565 cupin 2, conserved barrel. (365 aa) |
| | Pden_0168 | KEGG: mes:Meso_3566 hypothetical protein. (256 aa) |
| | Pden_0173 | PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rme:Rmet_4907 fumarylacetoacetate (FAA) hydrolase. (236 aa) |
| | Pden_0174 | TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mlo:mlr1135 maleylacetoacetate isomerase. (217 aa) |
| | Pden_0194 | KEGG: bxe:Bxe_C0656 hypothetical protein. (274 aa) |
| | Pden_0197 | KEGG: pen:PSEEN2793 3-hydroxyacyl-CoA dehydrogenase PhaC; TIGRFAM: 3-hydroxyacyl-CoA dehydrogenase PaaC; PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (509 aa) |
| | Pden_0198 | PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mag:amb2599 acyl-CoA dehydrogenase. (386 aa) |
| | Pden_0201 | PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: jan:Jann_0676 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (690 aa) |
| | Pden_0208 | PFAM: 4-oxalocrotonate tautomerase; KEGG: rso:RS05436 hypothetical protein. (59 aa) |
| | Pden_0221 | KEGG: bxe:Bxe_C0656 hypothetical protein. (287 aa) |
| | Pden_0223 | Succinate-semialdehyde dehydrogenase (NAD(P)(+)); PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb2_0802 aldehyde dehydrogenase family protein. (476 aa) |
| | Pden_0243 | Succinate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_4451 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (492 aa) |
| | Pden_0245 | PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_A0050 5-carboxymethyl-2-hydroxymuconate delta-isomerase. (285 aa) |
| | Pden_0284 | PFAM: Asp/Glu racemase; KEGG: sme:SMb20431 hypothetical arylmalonate decarboxylase protein. (247 aa) |
| | Pden_0287 | PFAM: peptidase M24; KEGG: sme:SMb20434 putative hydrolasepeptidase protein. (393 aa) |
| | Pden_0288 | PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sme:SMb20435 hypothetical protein. (333 aa) |
| | Pden_0289 | PFAM: aldehyde dehydrogenase; KEGG: sil:SPO1137 succinate-semialdehyde dehydrogenase. (483 aa) |
| | Pden_0290 | PFAM: aminotransferase class-III; KEGG: sit:TM1040_2691 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (456 aa) |
| | Pden_0323 | PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: atc:AGR_L_1864 biotin carboxylase protein A2. (588 aa) |
| | dapF | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (275 aa) |
| | Pden_0488 | PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rsp:RSP_1146 glutamine-pyruvate aminotransferase. (1516 aa) |
| | Pden_0490 | TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sit:TM1040_2822 glutamate synthase, small subunit. (497 aa) |
| | Pden_0541 | Pyruvate phosphate dikinase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; KEGG: rsp:RSP_1859 pyruvate phosphate dikinase. (853 aa) |
| | Pden_0546 | PFAM: monooxygenase, FAD-binding; KEGG: rsp:RSP_2656 putative salicylate hydroxylase (salicylate 1-monooxygenase). (373 aa) |
| | Pden_0551 | TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: sil:SPO0340 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase. (464 aa) |
| | Pden_0554 | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (510 aa) |
| | Pden_0555 | KEGG: rsp:RSP_0965 2-oxoglutarate dehydrogenase E1 component (alpha-ketoglutarate dehydrogenase); TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; Transketolase, central region. (988 aa) |
| | sucD | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (294 aa) |
| | sucC | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (397 aa) |
| | mdh | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (320 aa) |
| | Pden_0563 | Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; KEGG: rsp:RSP_0970 putative citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family. (279 aa) |
| | Pden_0566 | PFAM: MaoC domain protein dehydratase; KEGG: sil:SPO0355 hypothetical protein. (344 aa) |
| | Pden_0567 | PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rsp:RSP_0974 succinate dehydrogenase cytochrome b-556 subunit. (130 aa) |
| | Pden_0568 | KEGG: rsp:RSP_0975 putative succinate dehydrogenase, hydrophobic membrane anchor protein. (129 aa) |
| | Pden_0569 | KEGG: rsp:RSP_0976 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (600 aa) |
| | Pden_0572 | TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: rde:RD1_1630 succinate dehydrogenase, iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa) |
| | Pden_0611 | TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: rsp:RSP_2968 dihydrolipoamide dehydrogenase. (463 aa) |
| | Pden_0631 | 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: rsp:RSP_0885 thiosulfate sulfurtransferase, rhodanese-like. (286 aa) |
| | Pden_0655 | PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rsp:RSP_1942 sulfite/nitrite reductase hemoprotein subunit. (551 aa) |
| | Pden_0656 | Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (243 aa) |
| | Pden_0679 | PFAM: Asp/Glu racemase; KEGG: pcr:Pcryo_0404 Asp/Glu racemase. (236 aa) |
| | dapA | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (291 aa) |
| | Pden_0729 | PFAM: aminotransferase, class V; KEGG: rsp:RSP_0245 serine-pyruvate aminotransferase/aspartate aminotransferase. (390 aa) |
| | Pden_0735 | Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: mmr:Mmar10_2526 carboxymethylenebutenolidase. (296 aa) |
| | Pden_0799 | Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: rde:RD1_1001 citrate lyase, beta subunit, putative; Belongs to the HpcH/HpaI aldolase family. (341 aa) |
| | Pden_0812 | KEGG: sil:SPO3353 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase. (291 aa) |
| | Pden_0813 | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (384 aa) |
| | Pden_0814 | TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_1352 D-3-phosphoglycerate dehydrogenase. (529 aa) |
| | Pden_0848 | Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rsp:RSP_1217 phosphate acetyltransferase. (760 aa) |
| | pdxH | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (220 aa) |
| | Pden_0862 | KEGG: rsp:RSP_1849 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family. (418 aa) |
| | Pden_0882 | 6-phosphofructokinase; PFAM: PfkB domain protein; KEGG: rsp:RSP_2334 carbohydrate kinase, PfkB; Belongs to the carbohydrate kinase PfkB family. (319 aa) |
| | gltX1 | glutamate--tRNA(Gln) ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (441 aa) |
| | Pden_0913 | PFAM: homogentisate 1,2-dioxygenase; KEGG: sit:TM1040_2621 homogentisate 1,2-dioxygenase. (453 aa) |
| | glyA | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (427 aa) |
| | Pden_1008 | KEGG: rsp:RSP_4009 phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase. (318 aa) |
| | Pden_1060 | KEGG: sil:SPO0875 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (331 aa) |
| | Pden_1114 | FO synthase subunit 1; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cps:CPS_4049 radical SAM domain protein. (380 aa) |
| | Pden_1115 | FO synthase subunit 2; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cps:CPS_4048 conserved hypothetical protein TIGR00423. (418 aa) |
| | Pden_1116 | LPPG:FO 2-phospho-L-lactate transferase; PFAM: protein of unknown function UPF0052 and CofD; KEGG: cps:CPS_4047 LPPG:Fo 2-phospho-L-lactate transferase. (317 aa) |
| | Pden_1117 | Phospholactate guanylyltransferase; PFAM: protein of unknown function DUF121; KEGG: cps:CPS_4046 hypothetical protein. (216 aa) |
| | Pden_1118 | Coenzyme F420-0 gamma-glutamyl ligase; TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: cps:CPS_4045 putative F420-dependent oxidoreductase. (257 aa) |
| | Pden_1161 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. (401 aa) |
| | Pden_1174 | KEGG: bam:Bamb_6587 muconate and chloromuconate cycloisomerases; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. (396 aa) |
| | Pden_1175 | PFAM: Muconolactone delta-isomerase; KEGG: bam:Bamb_6586 muconolactone delta-isomerase. (96 aa) |
| | Pden_1176 | TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: aci:ACIAD1442 catechol 1,2-dioxygenase. (312 aa) |
| | Pden_1177 | PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bur:Bcep18194_C7046 ring hydroxylating dioxygenase, alpha subunit. (452 aa) |
| | Pden_1178 | 2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: bur:Bcep18194_C7047 2-chlorobenzoate 1,2-dioxygenase. (162 aa) |
| | Pden_1179 | PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: bam:Bamb_6582 oxidoreductase FAD/NAD(P)-binding domain protein. (342 aa) |
| | Pden_1180 | PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_C7049 cis-diol dehydrogenase. (261 aa) |
| | Pden_1182 | TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_0382 b-ketoadipate enol-lactone hydrolase. (265 aa) |
| | Pden_1186 | Glutathione-independent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: atc:AGR_C_2885 hypothetical protein. (394 aa) |
| | ureC | TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; KEGG: sil:SPO1714 urease, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (562 aa) |
| | ureB | KEGG: sme:SMc01939 urease beta subunit protein; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; Belongs to the urease beta subunit family. (105 aa) |
| | ureA | KEGG: rsp:RSP_0309 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; Belongs to the urease gamma subunit family. (103 aa) |
| | Pden_1245 | KEGG: sil:SPO3031 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase. (212 aa) |
| | Pden_1254 | PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3401 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (481 aa) |
| | Pden_1271 | acetyl-CoA carboxylase carboxyltransferase subunit alpha; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (450 aa) |
| | Pden_1272 | Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (173 aa) |
| | Pden_1275 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (672 aa) |
| | Pden_1290 | PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: aeh:Mlg_0126 Orn/DAP/Arg decarboxylase 2. (414 aa) |
| | Pden_1293 | KEGG: mca:MCA1436 serine acetyltransferase CysE, putative. (180 aa) |
| | fhs1 | PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: rsp:RSP_0663 formate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (555 aa) |
| | Pden_1363 | PFAM: isocitrate lyase and phosphorylmutase; KEGG: ccr:CC1764 isocitrate lyase. (535 aa) |
| | Pden_1364 | KEGG: hne:HNE_1238 malate synthase A; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family. (540 aa) |
| | Pden_1397 | PFAM: glutamine synthetase, catalytic region; KEGG: rsp:RSP_0377 probable glutamine synthetase. (452 aa) |
| | Pden_1603 | Dihydrolipoyllysine-residue succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sme:SMb20019 putative dihydrolipoamide succinyltransferase protein. (377 aa) |
| | Pden_1640 | Phosphotransacetylase; KEGG: rsp:RSP_4009 phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase. (318 aa) |
| | Pden_1672 | 5-deoxyglucuronate isomerase; PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bmb:BruAb2_0514 IolB protein. (268 aa) |
| | Pden_1674 | 2-keto-myo-inositol dehydratase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_177GM iolE protein. (298 aa) |
| | Pden_1675 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rsp:RSP_3284 acetolactate synthase. (609 aa) |
| | Pden_1676 | 5-dehydro-2-deoxygluconokinase; PFAM: PfkB domain protein; KEGG: bmb:BruAb2_0517 IolC myo-catabolism protein. (635 aa) |
| | Pden_1677 | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_627 putative IolI protein. (266 aa) |
| | iolG | Myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose). (336 aa) |
| | fbp | PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rsp:RSP_1285 fructose-1,6-bisphosphatase I. (330 aa) |
| | Pden_1696 | PFAM: phosphoribulokinase/uridine kinase; KEGG: rsp:RSP_1284 phosphoribulokinase. (290 aa) |
| | Pden_1697 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (668 aa) |
| | Pden_1698 | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (359 aa) |
| | cbbL | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (487 aa) |
| | Pden_1700 | PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: rpa:RPA1560 ribulose-bisphosphate carboxylase small chain. (129 aa) |
| | Pden_1703 | KEGG: pfo:Pfl_2975 quinohemoprotein amine dehydrogenase, 60 kDa subunit. (512 aa) |
| | Pden_1876 | TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: rsp:RSP_0404 fructose - 1,6 - bisphosphatase, GlpX-like. (321 aa) |
| | fumC | Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (465 aa) |
| | pgk | PFAM: phosphoglycerate kinase; KEGG: rsp:RSP_4044 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (398 aa) |
| | Pden_1920 | PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: rsp:RSP_4045 fructose-bisphosphate aldolase. (309 aa) |
| | Pden_1941 | Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: jan:Jann_0915 glycolate reductase. (336 aa) |
| | pgi | PFAM: phosphoglucose isomerase (PGI); KEGG: rsp:RSP_2736 glucose-6-phosphate isomerase; Belongs to the GPI family. (533 aa) |
| | pgl | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (224 aa) |
| | zwf | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (500 aa) |
| | edd | 6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (600 aa) |
| | accD | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (313 aa) |
| | Pden_1997 | Putative uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (224 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (421 aa) |
| | Pden_2026 | KEGG: rsp:RSP_0745 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | Pden_2027 | TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0747 short-chain dehydrogenase/reductase. (241 aa) |
| | argD | TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: rsp:RSP_2008 acetylornithine aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (390 aa) |
| | Pden_2178 | methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sit:TM1040_0637 glyoxalase/bleomycin resistance protein/dioxygenase. (134 aa) |
| | Pden_2195 | Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: sit:TM1040_3471 hydroxypyruvate reductase. (408 aa) |
| | Pden_2224 | Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rsp:RSP_1593 phosphate acetyltransferase. (759 aa) |
| | Pden_2236 | PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_2524 possible carboxymuconolactone decarboxylase family protein. (134 aa) |
| | Pden_2237 | PFAM: Carboxymuconolactone decarboxylase; KEGG: jan:Jann_1188 carboxymuconolactone decarboxylase. (130 aa) |
| | Pden_2257 | KEGG: rsp:RSP_1012 succinate-semialdehyde dehdyrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (490 aa) |
| | Pden_2276 | PFAM: pyruvate kinase; KEGG: sil:SPO3600 pyruvate kinase; Belongs to the pyruvate kinase family. (481 aa) |
| | cysQ | 3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (265 aa) |
| | Pden_2319 | TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: rsp:RSP_2172 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (287 aa) |
| | Pden_2324 | PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_0900 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (398 aa) |
| | Pden_2338 | KEGG: sme:SMb21186 putative 4-aminobutyrate aminotransferase protein; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (422 aa) |
| | accA | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (318 aa) |
| | Pden_2358 | KEGG: rsp:RSP_2590 hypothetical protein. (256 aa) |
| | adh | Aldehyde dehydrogenase (NAD(+)); Catalyzes the NAD(+)-dependent oxidation of acetaldehyde to acetate. (508 aa) |
| | Pden_2367 | PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmb:BruAb1_0198 alcohol dehydrogenase, zinc-containing. (344 aa) |
| | Pden_2379 | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mes:Meso_1284 glyoxalase/bleomycin resistance protein/dioxygenase. (264 aa) |
| | Pden_2393 | 6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (466 aa) |
| | Pden_2483 | PFAM: cytochrome c oxidase, subunit I; KEGG: sil:SPOA0216 nitric oxide reductase, large subunit. (462 aa) |
| | Pden_2484 | KEGG: sil:SPOA0217 nitric oxide reductase, small subunit. (150 aa) |
| | nirS | Dissimilatory nitrite reductase (NO-forming), cytochrome cd1 type apoprotein; Inactivation of this cytochrome oxidase results in the loss of nitrite and nitric oxide reductase activities, but not of nitrous oxide reductase activity. (596 aa) |
| | nirE | uroporphyrinogen-III C-methyltransferase; Catalyzes the methylation of both C-2 and C-7 of uroporphyrinogen III leading to precorrin-1 and precorrin-2; their oxidative esterification gives respectively factor I octamethyl ester and sirohydrochlorin (By similarity). Inactivation of uroporphyrinogen- III methyltransferase results in the loss of nitrite and nitric oxide reductase activities, but not of nitrous oxide reductase activity. Likely involved in heme D1 biosynthesis. (287 aa) |
| | tal | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (217 aa) |
| | gpmI | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (507 aa) |
| | dapD | KEGG: rsp:RSP_1131 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; Belongs to the transferase hexapeptide repeat family. (274 aa) |
| | Pden_2552 | PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rsp:RSP_1687 3-hydroxybutyryl-CoA dehydrogenase. (291 aa) |
| | Pden_2556 | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bja:blr3273 probable Uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (244 aa) |
| | Pden_2572 | PFAM: ribulose-phosphate 3-epimerase; KEGG: rsp:RSP_2864 pentose-5-phosphate-3-epimerase. (244 aa) |
| | folD1 | 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (298 aa) |
| | Pden_2663 | KEGG: sil:SPO0142 beta-ketothiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa) |
| | Pden_2680 | PFAM: Glucokinase; KEGG: sil:SPO0864 glucokinase, putative; Belongs to the bacterial glucokinase family. (307 aa) |
| | Pden_2751 | PFAM: Aldose 1-epimerase; KEGG: sme:SMc03798 probable aldose 1-epimerase protein. (336 aa) |
| | Pden_2755 | PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_1507 aldehyde dehydrogenase. (483 aa) |
| | asd | Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (340 aa) |
| | dapB | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (268 aa) |
| | Pden_2827 | TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sme:SMa0007 probable FdoI formate dehydrogenase-O,gamma subunit. (228 aa) |
| | Pden_2828 | TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sme:SMa0005 probable FdoH formate dehydrogenase-O, beta subunit. (332 aa) |
| | Pden_2829 | KEGG: sme:SMa0002 probable FdoG formate dehydrogenase-O alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (820 aa) |
| | Pden_2830 | PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sme:SMa0002 probable FdoG formate dehydrogenase-O alpha subunit. (199 aa) |
| | Pden_2840 | PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_1679 acyl-CoA dehydrogenase. (551 aa) |
| | dapE | Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (382 aa) |
| | pckA | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (532 aa) |
| | Pden_2854 | KEGG: sme:SMc03086 putative NAD-dependent formate dehydrogenase delta subunit protein. (73 aa) |
| | Pden_2856 | TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rsp:RSP_1080 NAD-dependent formate dehydrogenase, alpha subunit. (959 aa) |
| | Pden_2857 | PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rsp:RSP_1079 NAD dependent formate dehydrogenase, beta subunit (51 kDa). (513 aa) |
| | Pden_2858 | PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: gbe:GbCGDNIH1_1932 NAD-dependent formate dehydrogenase gamma subunit (FdsG). (159 aa) |
| | Pden_2870 | KEGG: sil:SPO2918 acetyl-CoA acyltransferase/thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa) |
| | Pden_2871 | PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rsp:RSP_2196 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase. (727 aa) |
| | Pden_2885 | KEGG: rsp:RSP_2481 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein. (279 aa) |
| | Pden_2906 | PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bms:BRA0447 acyl-CoA dehydrogenase. (375 aa) |
| | Pden_2907 | KEGG: bms:BRA0448 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa) |
| | Pden_2909 | PFAM: AMP-dependent synthetase and ligase; KEGG: bms:BRA0450 acetyl-CoA synthetase, putative. (563 aa) |
| | dld | D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family. (569 aa) |
| | Pden_2932 | Gluconate kinase, SKI family; KEGG: tfu:Tfu_2114 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase. (167 aa) |
| | Pden_2961 | KEGG: rsp:RSP_1559 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (404 aa) |
| | Pden_2993 | PFAM: Pyrrolo-quinoline quinone; KEGG: rpe:RPE_3139 pyrrolo-quinoline quinone. (632 aa) |
| | Pden_2994 | Amino acid ABC transporter substrate-binding protein, PAAT family; SMART: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_1908 extracellular solute-binding protein, family 3; TC 3.A.1.3.-. (276 aa) |
| | Pden_2995 | Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation. (177 aa) |
| | Pden_2996 | Methanol dehydrogenase, beta subunit; Catalyzes the oxidation of primary alcohols including methanol. (103 aa) |
| | Pden_2999 | KEGG: rpc:RPC_1913 MxaA protein, putative. (267 aa) |
| | Pden_3000 | PFAM: von Willebrand factor, type A; KEGG: rpe:RPE_3132 von Willebrand factor, type A. (335 aa) |
| | Pden_3001 | KEGG: rpe:RPE_3131 hypothetical protein. (183 aa) |
| | Pden_3002 | KEGG: rpe:RPE_3130 von Willebrand factor, type A. (267 aa) |
| | Pden_3003 | KEGG: rpe:RPE_3129 MxaD protein, putative. (177 aa) |
| | Pden_3020 | PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mca:MCA1549 succinate dehydrogenase, hydrophobic membrane anchor protein, putative. (127 aa) |
| | Pden_3021 | PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: aeh:Mlg_1332 succinate dehydrogenase, cytochrome b subunit. (125 aa) |
| | Pden_3022 | KEGG: rru:Rru_A1205 succinate dehydrogenase/fumarate reductase iron-sulfur protein. (122 aa) |
| | Pden_3052 | PFAM: aminotransferase class-III; KEGG: pol:Bpro_0421 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (463 aa) |
| | Pden_3053 | PFAM: Amidase; KEGG: mxa:MXAN_2852 amidase family protein; Belongs to the amidase family. (475 aa) |
| | Pden_3071 | Aconitase; PFAM: aconitate hydratase domain protein; KEGG: pol:Bpro_3871 aconitate hydratase-like. (854 aa) |
| | Pden_3094 | PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rsp:RSP_0492 hydrogenase small subunit. (329 aa) |
| | Pden_3095 | PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rsp:RSP_0493 hydrogenase large subunit. (477 aa) |
| | Pden_3097 | KEGG: rsp:RSP_0495 hydrogenase protein small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein. (361 aa) |
| | Pden_3098 | PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rsp:RSP_0496 hydrogenase protein large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (597 aa) |
| | Pden_3211 | PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_1577 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (477 aa) |
| | Pden_3212 | PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV3314 putative NADP-dependent alcohol dehydrogenase. (347 aa) |
| | Pden_3215 | PFAM: Carboxymuconolactone decarboxylase; KEGG: sai:Saci_1814 carboxymuconolactone decarboxylase. (124 aa) |
| | Pden_3225 | PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rru:Rru_A1309 acetoacetyl-CoA reductase. (765 aa) |
| | Pden_3226 | KEGG: rru:Rru_A1310 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (373 aa) |
| | Pden_3228 | PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C7342 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (499 aa) |
| | Pden_3257 | PFAM: Carboxymuconolactone decarboxylase; KEGG: pst:PSPTO_4478 4-carboxymuconolactone decarboxylase. (148 aa) |
| | Pden_3260 | PFAM: aldehyde dehydrogenase; KEGG: dra:DRA0126 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (470 aa) |
| | Pden_3264 | PFAM: aldehyde dehydrogenase; KEGG: sme:SMb20262 putative semialdehyde dehydrogenase protein. (508 aa) |
| | Pden_3269 | KEGG: bja:bll1020 hypothetical protein. (220 aa) |
| | Pden_3272 | PFAM: HpcH/HpaI aldolase; KEGG: sus:Acid_0199 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (283 aa) |
| | Pden_3274 | 4-oxalomesaconate hydratase; PFAM: amidohydrolase 2; KEGG: rme:Rmet_3705 amidohydrolase 2. (343 aa) |
| | Pden_3290 | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: bms:BRA0233 oxidoreductase, FAD-binding, putative. (735 aa) |
| | Pden_3424 | PFAM: dihydrodipicolinate synthetase; KEGG: rsp:RSP_3456 putative dihydrodipicolinate synthase; Belongs to the DapA family. (308 aa) |
| | Pden_3433 | PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_3447 putative dehydrogenase. (316 aa) |
| | Pden_3437 | PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: jan:Jann_2909 5-carboxymethyl-2-hydroxymuconate delta-isomerase. (228 aa) |
| | Pden_3463 | PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sil:SPO3737 pyridine nucleotide-disulphide oxidoreductase family protein. (401 aa) |
| | Pden_3488 | PFAM: monooxygenase, FAD-binding; Phenol hydroxylase domain protein dimerisation; KEGG: bja:blr4222 phenol 2-monooxygenase. (635 aa) |
| | Pden_3490 | KEGG: sit:TM1040_0561 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding. (389 aa) |
| | Pden_3491 | TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: jan:Jann_1663 3-oxoadipate enol-lactonase. (262 aa) |
| | Pden_3492 | TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: sit:TM1040_0559 4-carboxymuconolactone decarboxylase. (143 aa) |
| | Pden_3493 | TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: sil:SPOA0044 protocatechuate 3,4-dioxygenase beta subunit. (240 aa) |
| | Pden_3494 | KEGG: sil:SPOA0043 protocatechuate 3,4-dioxygenase alpha subunit; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase. (236 aa) |
| | Pden_3496 | PFAM: fumarate lyase; KEGG: sil:SPOA0432 3-carboxy-cis,cis-muconate cycloisomerase. (433 aa) |
| | Pden_3514 | Allantoinase; PFAM: amidohydrolase; KEGG: mes:Meso_2641 amidohydrolase. (460 aa) |
| | Pden_3548 | Fumarylacetoacetate hydrolase; KEGG: sit:TM1040_2622 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase. (401 aa) |
| | Pden_3549 | TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: sme:SMc03206 maleylacetoacetate isomerase (glutathione transferase ZETA 1) protein. (211 aa) |
| | hemC | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. (313 aa) |
| | Pden_3661 | PFAM: MaoC domain protein dehydratase; KEGG: rsp:RSP_2305 MaoC family protein. (148 aa) |
| | Pden_3664 | L-threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. (347 aa) |
| | rpiA | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (241 aa) |
| | Pden_3678 | PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: rsp:RSP_0403 homoserine dehydrogenase. (438 aa) |
| | Pden_3681 | KEGG: rsp:RSP_2192 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein. (714 aa) |
| | Pden_3684 | PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: sil:SPO1101 propionyl-CoA carboxylase, alpha subunit. (685 aa) |
| | Pden_3688 | PFAM: carboxyl transferase; KEGG: rsp:RSP_2189 propionyl-CoA carboxylase beta chain. (510 aa) |
| | Pden_3702 | Glutamate--putrescine ligase; PFAM: glutamine synthetase, catalytic region; KEGG: rsp:RSP_0375 probable glutamine synthetase. (443 aa) |
| | Pden_3716 | KEGG: sit:TM1040_1132 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family. (430 aa) |
| | gltX2 | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (468 aa) |
| | Pden_3794 | PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: aor:AO090026000040 uncharacterized protein, possibly involved in glyoxylate utilization Pfam: Cupin_3 Cupin_2 AraC_binding Cupin_1. (275 aa) |
| | Pden_3809 | Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: rsp:RSP_2848 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (306 aa) |
| | prs | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (339 aa) |
| | Pden_3861 | PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rsp:RSP_2147 O-acetylserine (thiol)-lyase, cysteine synthase. (343 aa) |
| | Pden_3872 | Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: nha:Nham_0996 glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (453 aa) |
| | Pden_3873 | TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_0960 alcohol dehydrogenase. (429 aa) |
| | Pden_3875 | KEGG: sil:SPO0368 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein. (688 aa) |
| | Pden_3890 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (434 aa) |
| | Pden_3891 | Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (456 aa) |
| | pdhA | Pyruvate dehydrogenase (acetyl-transferring); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (343 aa) |
| | Pden_3894 | TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rsp:RSP_1758 probable succinyl-diaminopimelate desuccinylase. (433 aa) |
| | Pden_3898 | PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_0313 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (776 aa) |
| | Pden_3915 | PFAM: Transthyretin; KEGG: rde:RD1_4150 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (116 aa) |
| | bhcA | Serine-glyoxylate aminotransferase apoenzyme; Catalyzes the transamination of glyoxylate into glycine using L-aspartate as the preferred amino group donor. Is essential for the growth of P.denitrificans in the presence of glycolate and glyoxylate since it functions in glyoxylate assimilation via the beta- hydroxyaspartate cycle (BHAC). Can catalyze the reverse reaction in vitro, and also use L-serine and L-glutamate as amino group donor, but with much less efficiency than L-aspartate. (396 aa) |
| | Pden_3979 | PFAM: Enoyl-CoA hydratase/isomerase; KEGG: jan:Jann_2154 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa) |
| | Pden_4037 | PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: jan:Jann_3650 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. (306 aa) |
| | glcB | Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (715 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (425 aa) |
| | Pden_4111 | KEGG: bmb:BruAb2_0162 hypothetical protein. (277 aa) |
| | Pden_4119 | Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (501 aa) |
| | Pden_4144 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1144 aa) |
| | Pden_4150 | PFAM: cytochrome c, class I; KEGG: sil:SPO0993 monoheme cytochrome c SoxX. (157 aa) |
| | Pden_4151 | KEGG: sil:SPO0994 sulfur oxidation protein SoxY. (140 aa) |
| | Pden_4152 | Sulfur compound chelating protein SoxZ; KEGG: rde:RD1_1513 sulfur oxidation Z protein. (109 aa) |
| | Pden_4153 | Diheme cytochrome SoxA (sulfur oxidation); C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fi [...] (290 aa) |
| | Pden_4154 | Sulfate thiol esterase SoxB; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sil:SPO0997 sulfur oxidation B protein; Belongs to the 5'-nucleotidase family. (564 aa) |
| | Pden_4155 | Sulfur dehydrogenase subunit SoxC; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rde:RD1_1516 sulfite dehydrogenase SoxC protein. (430 aa) |
| | Pden_4156 | Sulfur dehydrogenase subunit SoxD; PFAM: cytochrome c, class I; KEGG: sil:SPO0999 diheme cytochrome c SoxD. (382 aa) |
| | Pden_4206 | PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr6070 putative alcohol dehydrogenase. (327 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (367 aa) |
| | Pden_4209 | PFAM: phosphate acetyl/butaryl transferase; KEGG: lpp:lpp2215 phosphate acetyltransferase. (308 aa) |
| | acsA | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (651 aa) |
| | nosZ | Nitrous oxide reductase apoprotein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. (652 aa) |
| | ubiX | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (197 aa) |
| | Pden_4233 | TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: mmr:Mmar10_2703 respiratory nitrate reductase, gamma subunit. (233 aa) |
| | Pden_4235 | TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rde:RD1_2443 nitrate reductase, beta subunit. (505 aa) |
| | Pden_4236 | TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rde:RD1_2442 nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1254 aa) |
| | Pden_4257 | PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: sit:TM1040_2704 molybdopterin dehydrogenase, FAD-binding. (481 aa) |
| | Pden_4258 | PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: sit:TM1040_2705 xanthine dehydrogenase. (770 aa) |
| | Pden_4301 | Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (919 aa) |
| | tpiA | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (247 aa) |
| | Pden_4309 | PFAM: acetyl-CoA hydrolase/transferase; KEGG: rsp:RSP_0029 acetyl-CoA hydrolase/transferase family protein. (500 aa) |
| | Pden_4315 | KEGG: rsp:RSP_1831 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (462 aa) |
| | cysD | KEGG: nar:Saro_3252 sulfate adenylyltransferase, small subunit; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase. (311 aa) |
| | cysC | Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (640 aa) |
| | Pden_4397 | PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: sil:SPO3480 glycolate oxidase, iron-sulfur subunit. (431 aa) |
| | Pden_4398 | PFAM: FAD linked oxidase domain protein; KEGG: sit:TM1040_2501 FAD linked oxidase-like. (377 aa) |
| | Pden_4399 | PFAM: FAD linked oxidase domain protein; KEGG: rsp:RSP_1020 putative glycolate oxidase subunit protein. (484 aa) |
| | Pden_4412 | PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mll2878 glutaryl Co-A dehydrogenase. (403 aa) |
| | Pden_4416 | Succinate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_2660 hypothetical protein. (477 aa) |
| | Pden_4423 | PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rsp:RSP_2883 phosphoglucomutase. (543 aa) |
| | Pden_4449 | Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: jan:Jann_3045 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (870 aa) |
| | Pden_4451 | TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rde:RD1_4167 assimilatory nitrite reductase, small subunit. (111 aa) |
| | Pden_4452 | TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rde:RD1_4168 assimilatory nitrite reductase, large subunit. (810 aa) |
| | Pden_4462 | KEGG: rsp:RSP_0147 glutamine synthetase class-I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp. (468 aa) |
| | Pden_4465 | KEGG: rsp:RSP_2959 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (333 aa) |
