STRINGSTRING
Pden_0247 Pden_0247 Pden_1404 Pden_1404 Pden_1671 Pden_1671 Pden_1681 Pden_1681 Pden_1789 Pden_1789 Pden_2160 Pden_2160 Pden_2630 Pden_2630 Pden_2645 Pden_2645 Pden_2651 Pden_2651 Pden_2695 Pden_2695 Pden_4464 Pden_4464
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pden_0247Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msu:MS0201 RbsB protein; TC 3.A.1.2.-. (348 aa)
Pden_1404PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_2289 flagellar motor protein. (463 aa)
Pden_1671PFAM: extracellular solute-binding protein, family 5; KEGG: atc:AGR_L_1481 dipeptide transport protein. (538 aa)
Pden_1681Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_L_632 putative rhizopine-binding protein precursor; TC 3.A.1.2.-. (306 aa)
Pden_1789PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_6099 possible flagellar switch protein FliM. (392 aa)
Pden_2160Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_L_1084 putative periplasmic ribose-binding protein of ABC transport system; TC 3.A.1.2.-. (301 aa)
Pden_2630KEGG: rsp:RSP_1316 flagellar motor protein. (166 aa)
Pden_2645KEGG: sit:TM1040_2951 chemotaxis protein MotA. (148 aa)
Pden_2651PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_1310 putative flagellar motor switch protein FliN/FliY. (85 aa)
Pden_2695KEGG: rsp:RSP_1302 putative chemotaxis MotB protein. (266 aa)
Pden_4464PFAM: flagellar motor switch protein FliG; KEGG: rsp:RSP_2220 possible flagellar motor switch protein (FliG). (351 aa)
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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