(10 nodes) Response to virus, and Enoyl-(Acyl carrier protein) reductase network (Amycolatopsis orientalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANN15501.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	ANN15503.1	Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	ANN21839.1	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology. (741 aa)
	ANN17247.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	ANN17248.1	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
	ANN17249.1	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	ANN17250.1	Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	ANN17251.1	Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ANN17252.1	Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	ANN17253.1	Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (59 aa)

Your Current Organism:

Amycolatopsis orientalis

NCBI taxonomy Id: 31958
Other names: A. orientalis, ATCC 19795, Actinoplanes sp. ATCC 53771, Amycolatopsis orientalis orientalis, Amycolatopsis orientalis subsp. orientalis, CIP 107113, DSM 40040, IFO 12806, IMSNU 20058, ISP 5040, JCM 4235, JCM 4600, KCTC 9412, NBRC 12806, NRRL 2450, Nocardia orientalis, Streptomyces orientalis, UNIQEM 181, VKM Ac-866

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANN15501.1	ANN15503.1	SD37_07410	SD37_07420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ANN15503.1	ANN15501.1	SD37_07420	SD37_07410	Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ANN17247.1	ANN17248.1	SD37_17420	SD37_17425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANN17247.1	ANN17249.1	SD37_17420	SD37_17430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANN17247.1	ANN17250.1	SD37_17420	SD37_17435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ANN17247.1	ANN17251.1	SD37_17420	SD37_17440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ANN17247.1	ANN17252.1	SD37_17420	SD37_17445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ANN17247.1	ANN21839.1	SD37_17420	SD37_17415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANN17248.1	ANN17247.1	SD37_17425	SD37_17420	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANN17248.1	ANN17249.1	SD37_17425	SD37_17430	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ANN17248.1	ANN17250.1	SD37_17425	SD37_17435	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ANN17248.1	ANN17251.1	SD37_17425	SD37_17440	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ANN17248.1	ANN17252.1	SD37_17425	SD37_17445	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ANN17248.1	ANN17253.1	SD37_17425	SD37_17450	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.937
ANN17248.1	ANN21839.1	SD37_17425	SD37_17415	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ANN17249.1	ANN17247.1	SD37_17430	SD37_17420	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANN17249.1	ANN17248.1	SD37_17430	SD37_17425	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ANN17249.1	ANN17250.1	SD37_17430	SD37_17435	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ANN17249.1	ANN17251.1	SD37_17430	SD37_17440	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ANN17249.1	ANN17252.1	SD37_17430	SD37_17445	Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946

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