STRINGSTRING
Dgeo_0389 Dgeo_0389 Dgeo_1269 Dgeo_1269 Dgeo_1558 Dgeo_1558 Dgeo_1674 Dgeo_1674 Dgeo_1789 Dgeo_1789 Dgeo_2096 Dgeo_2096
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_0389Histidine kinase; PFAM: ATP-binding region, ATPase-like: (3.7e-34) histidine kinase A-like: (0.00028); KEGG: dra:DRB0029 sensor histidine kinase/response regulator, ev=7e-46, 44% identity. (557 aa)
Dgeo_1269PFAM: response regulator receiver: (1e-06) ATP-binding region, ATPase-like: (4.6e-35) histidine kinase A-like: (4.5e-14); KEGG: dra:DR1175 sensor histidine kinase/response regulator, ev=1e-162, 78% identity. (416 aa)
Dgeo_1558Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like: (4.7e-33) histidine kinase A-like: (0.0025); KEGG: xoo:XOO1106 two-component system sensor protein, ev=6e-26, 36% identity. (415 aa)
Dgeo_1674Diguanylate cyclase containing PAS domain; PFAM: GGDEF: (4.3e-08); KEGG: syn:slr0359 hypothetical protein, ev=8e-16, 31% identity. (320 aa)
Dgeo_1789Diguanylate cyclase with GAF sensor; TIGRFAM: GGDEF domain: (1.7e-05); PFAM: GGDEF: (4.2e-06) GAF: (4.2e-18); KEGG: dra:DRB0044 GGDEF family protein, ev=1e-42, 31% identity. (487 aa)
Dgeo_2096Multi-sensor signal transduction histidine kinase; PFAM: response regulator receiver: (1.8e-36) ATP-binding region, ATPase-like: (1.4e-38) histidine kinase A-like: (1.2e-11) PAS fold-3: (1.8e-24) PAS fold-4: (0.0019) PAS fold: (1.3e-11); SMART: PAS: (2.1e-07) PAC motif: (2.9e-09); KEGG: gvi:glr2749 two-component hybrid sensor and regulator, ev=0.0, 51% identity. (1140 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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