(6 nodes) Mixed, incl. Serine aminopeptidase, S33, and FAD dependent oxidoreductase network (Deinococcus geothermalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Dgeo_0941	Lactoylglutathione lyase and esterase family domains; PFAM: dienelactone hydrolase: (0.0002) phospholipase/Carboxylesterase: (6.8e-16) Glyoxalase/bleomycin resistance protein/dioxygenase: (2.2e-08); KEGG: bja:bll3247 dioxygenase, ev=2e-81, 52% identity. (552 aa)
	Dgeo_1167	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity. (89 aa)
	Dgeo_1170	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity. (457 aa)
	Dgeo_1171	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity. (258 aa)
	Dgeo_1172	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity. (497 aa)
	Dgeo_1173	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity. (298 aa)

Your Current Organism:

Deinococcus geothermalis

NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Dgeo_0941	Dgeo_1171	Lactoylglutathione lyase and esterase family domains; PFAM: dienelactone hydrolase: (0.0002) phospholipase/Carboxylesterase: (6.8e-16) Glyoxalase/bleomycin resistance protein/dioxygenase: (2.2e-08); KEGG: bja:bll3247 dioxygenase, ev=2e-81, 52% identity.	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	0.910
Dgeo_1167	Dgeo_1170	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	0.601
Dgeo_1167	Dgeo_1171	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	0.600
Dgeo_1167	Dgeo_1172	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	0.598
Dgeo_1167	Dgeo_1173	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity.	0.438
Dgeo_1170	Dgeo_1167	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	0.601
Dgeo_1170	Dgeo_1171	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	0.841
Dgeo_1170	Dgeo_1172	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	0.919
Dgeo_1170	Dgeo_1173	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity.	0.603
Dgeo_1171	Dgeo_0941	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	Lactoylglutathione lyase and esterase family domains; PFAM: dienelactone hydrolase: (0.0002) phospholipase/Carboxylesterase: (6.8e-16) Glyoxalase/bleomycin resistance protein/dioxygenase: (2.2e-08); KEGG: bja:bll3247 dioxygenase, ev=2e-81, 52% identity.	0.910
Dgeo_1171	Dgeo_1167	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	0.600
Dgeo_1171	Dgeo_1170	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	0.841
Dgeo_1171	Dgeo_1172	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	0.840
Dgeo_1171	Dgeo_1173	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity.	0.663
Dgeo_1172	Dgeo_1167	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	0.598
Dgeo_1172	Dgeo_1170	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	0.919
Dgeo_1172	Dgeo_1171	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	Hydrolase of the alpha/beta superfamily; KEGG: dra:DR1064 hypothetical protein, ev=6e-50, 69% identity.	0.840
Dgeo_1172	Dgeo_1173	KEGG: tte:TTE2409 hypothetical protein, ev=9e-57, 30% identity.	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity.	0.783
Dgeo_1173	Dgeo_1167	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity.	KEGG: dra:DR1539 hypothetical protein, ev=3e-18, 55% identity.	0.438
Dgeo_1173	Dgeo_1170	ROK domain protein; PFAM: ROK: (3e-27); KEGG: stt:t3253 putative N-acetylmannosamine kinase, ev=6e-42, 40% identity.	2-oxoacid dehydrogenase; KEGG: bcl:ABC3582 hypothetical protein, ev=2e-59, 35% identity.	0.603

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