STRINGSTRING
Dgeo_0279 Dgeo_0279 Dgeo_0475 Dgeo_0475 Dgeo_0537 Dgeo_0537 Dgeo_0538 Dgeo_0538 Dgeo_0539 Dgeo_0539 Dgeo_0540 Dgeo_0540 Dgeo_0541 Dgeo_0541 Dgeo_0542 Dgeo_0542 Dgeo_0544 Dgeo_0544 Dgeo_0572 Dgeo_0572 Dgeo_0611 Dgeo_0611 Dgeo_0667 Dgeo_0667 Dgeo_0672 Dgeo_0672 Dgeo_0725 Dgeo_0725 glgC glgC glgB glgB Dgeo_1198 Dgeo_1198 Dgeo_1875 Dgeo_1875 glgA glgA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_0279KEGG: dra:DR2265 hypothetical protein, ev=0.0, 69% identity. (736 aa)
Dgeo_0475PFAM: alpha amylase, catalytic region: (5.5e-72); SMART: Alpha amylase, catalytic subdomain: (2e-92); KEGG: dra:DR0723 glycosyl hydrolase, family 13, ev=0.0, 63% identity. (608 aa)
Dgeo_0537KEGG: dra:DR2036 trehalose synthase, putative, ev=0.0, 84% identity; TIGRFAM: Trehalose synthase-like: (0); PFAM: alpha amylase, catalytic region: (1.5e-59); SMART: Alpha amylase, catalytic subdomain: (4e-106). (556 aa)
Dgeo_0538PFAM: protein of unknown function UPF0005: (6.1e-19); KEGG: dra:DR0893 conserved hypothetical protein, ev=6e-88, 77% identity; Belongs to the BI1 family. (228 aa)
Dgeo_0539KEGG: dra:DR0463 maltooligosyltrehalose synthase, ev=0.0, 69% identity; TIGRFAM: Malto-oligosyltrehalose synthase: (0); PFAM: alpha amylase, catalytic region: (3.4e-05); SMART: Alpha amylase, catalytic subdomain: (2.8e-09). (944 aa)
Dgeo_0540KEGG: dra:DR0464 maltooligosyltrehalose trehalohydrolase, putative, ev=0.0, 68% identity; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase: (2.9e-289); PFAM: glycoside hydrolase, family 13-like: (1.8e-12) alpha amylase, catalytic region: (4e-09); SMART: Alpha amylase, catalytic subdomain: (9.6e-12). (603 aa)
Dgeo_0541Isoamylase; KEGG: dra:DR0264 glycogen operon protein GlgX, ev=0.0, 84% identity; TIGRFAM: Glycogen debranching enzyme GlgX: (0); PFAM: glycoside hydrolase, family 13-like: (1.1e-35) alpha amylase, catalytic region: (1.9e-15); SMART: Alpha amylase, catalytic subdomain: (1.2e-11); Belongs to the glycosyl hydrolase 13 family. (727 aa)
Dgeo_0542KEGG: dra:DR1693 hypothetical protein, ev=4e-58, 69% identity. (184 aa)
Dgeo_0544Predicted periplasmic protein; KEGG: dra:DR1818 hypothetical protein, ev=2e-19, 44% identity. (154 aa)
Dgeo_0572Amylosucrase; PFAM: alpha amylase, catalytic region: (2.5e-20); SMART: Alpha amylase, catalytic subdomain: (2.7e-36); KEGG: dra:DR0933 alpha-amlyase, ev=0.0, 74% identity. (650 aa)
Dgeo_0611Isoamylase / pullulanase; PFAM: alpha amylase, catalytic region: (3.5e-93); SMART: Alpha amylase, catalytic subdomain: (1.1e-106); KEGG: dra:DR1141 glycosyl hydrolase, family 13, ev=0.0, 72% identity. (496 aa)
Dgeo_0667KEGG: ttj:TTHA1261 4-alpha-glucanotransferase (amylomaltase) (disproportionating enzyme) (D-enzyme), ev=1e-159, 55% identity; TIGRFAM: 4-alpha-glucanotransferase: (4.9e-109); PFAM: glycoside hydrolase, family 77: (7.7e-217). (503 aa)
Dgeo_0672PFAM: alpha amylase, catalytic region: (4.5e-114); SMART: Alpha amylase, catalytic subdomain: (4.1e-148); KEGG: dra:DR1375 alpha-glucosidase, ev=0.0, 77% identity. (533 aa)
Dgeo_0725Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related: (1.9e-32); KEGG: mlo:mlr4205 glucoamylase, (glucan 1,4-alpha-glucosidase), ev=1e-150, 42% identity. (798 aa)
glgCGlucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (413 aa)
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (652 aa)
Dgeo_1198KEGG: dra:DR2195 alpha-glucan phosphorylase, putative, ev=0.0, 77% identity; TIGRFAM: Alpha-glucan phosphorylase: (0); PFAM: glycosyl transferase, family 35: (0.00028). (842 aa)
Dgeo_1875TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific: (0); PFAM: phosphoglucomutase/phosphomannomutase C terminal: (2.9e-12) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I: (1.1e-35) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II: (2.5e-17) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III: (1.9e-32); KEGG: pca:Pcar_1989 phosphoglucomutase, alpha-D-glucose phosphate-specific, ev=0.0, 61% identity. (547 aa)
glgAGlycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose. (447 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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