STRINGSTRING
Dgeo_0862 Dgeo_0862 Dgeo_1317 Dgeo_1317 comB comB Dgeo_1319 Dgeo_1319 Dgeo_1320 Dgeo_1320 Dgeo_1321 Dgeo_1321 Dgeo_1322 Dgeo_1322 Dgeo_1541 Dgeo_1541 Dgeo_1613 Dgeo_1613 Dgeo_1790 Dgeo_1790
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_0862KEGG: dra:DR1189 methylmalonyl-CoA mutase, alpha subunit, chain A, ev=0.0, 91% identity; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain: (8.1e-224); PFAM: methylmalonyl-CoA mutase: (1.8e-235). (548 aa)
Dgeo_1317TIGRFAM: carboxynorspermidine decarboxylase: (9.3e-283); PFAM: Orn/DAP/Arg decarboxylase 2: (4.9e-29); KEGG: dra:DR1410 carboxynorspermidine decarboxylase, ev=0.0, 85% identity. (408 aa)
comBPFAM: 2-phosphosulfolactate phosphatase: (1.9e-79); KEGG: dra:DR1400 putative 2-phosphosulfolactate phosphatase, ev=6e-81, 67% identity; Belongs to the ComB family. (241 aa)
Dgeo_1319PFAM: ribulose-phosphate 3-epimerase: (4.4e-103); KEGG: dra:DR1401 ribulose-phosphate 3-epimerase, ev=7e-95, 77% identity; Belongs to the ribulose-phosphate 3-epimerase family. (229 aa)
Dgeo_1320KEGG: dra:DR1084 methylmalonyl-CoA mutase, beta subunit, ev=0.0, 85% identity; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain: (5.2e-273) methylmalonyl-CoA mutase C-terminal domain: (6.1e-60); PFAM: methylmalonyl-CoA mutase: (0) cobalamin B12-binding: (7.7e-28). (722 aa)
Dgeo_1321Hypothetical protein. (162 aa)
Dgeo_1322methylmalonyl-CoA mutase metallochaperone MeaB; KEGG: dra:DR1060 hypothetical protein, ev=1e-122, 80% identity; TIGRFAM: LAO/AO transport system ATPase: (6.2e-124); PFAM: ArgK protein: (1.4e-159); SMART: ATPase: (1.2e-08). (351 aa)
Dgeo_1541methylmalonyl-CoA mutase, alpha subunit; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain: (5.3e-45); PFAM: cobalamin B12-binding: (1.7e-41); KEGG: dra:DR2032 methylmalonyl-CoA mutase, alpha subunit, chain B, ev=1e-60, 85% identity. (151 aa)
Dgeo_1613GTPase of G3E family, ArgK-like protein; TIGRFAM: LAO/AO transport system ATPase: (2.3e-90); PFAM: ArgK protein: (2.4e-147); KEGG: dra:DR1747 LAO/AO transport system kinase, ev=1e-136, 80% identity. (312 aa)
Dgeo_1790PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase: (2.8e-11); KEGG: dra:DR2022 hypothetical protein, ev=3e-59, 77% identity. (158 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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