STRINGSTRING
tatA tatA Dgeo_0606 Dgeo_0606 Dgeo_0607 Dgeo_0607 tatA-2 tatA-2 Dgeo_1516 Dgeo_1516 dtd dtd Dgeo_1518 Dgeo_1518 Dgeo_1519 Dgeo_1519 Dgeo_1520 Dgeo_1520 Dgeo_1554 Dgeo_1554 Dgeo_1555 Dgeo_1555 Dgeo_1556 Dgeo_1556 Dgeo_1781 Dgeo_1781 Dgeo_1903 Dgeo_1903 tatA-3 tatA-3 tatC tatC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tatATwin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (86 aa)
Dgeo_0606RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2: (1.8e-16) sigma-70 region 4: (4.3e-14) Sigma-70, region 4 type 2: (4.6e-13); KEGG: ttj:TTHB211 putative RNA polymerase sigma factor, ev=2e-27, 40% identity; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
Dgeo_0607KEGG: ttj:TTHB212 hypothetical protein, ev=3e-18, 36% identity. (210 aa)
tatA-2Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (104 aa)
Dgeo_1516Peptidase M23B; PFAM: Peptidoglycan-binding LysM: (8.1e-21) peptidase M23B: (4.7e-48); KEGG: dra:DR0848 lipoprotein, putative, ev=1e-137, 65% identity. (367 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (148 aa)
Dgeo_1518KEGG: dra:DR0889 hypothetical protein, ev=6e-29, 81% identity. (116 aa)
Dgeo_1519RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2: (4.1e-17) sigma-70 region 4: (9.5e-16) Sigma-70, region 4 type 2: (6.2e-19); KEGG: dra:DR0180 RNA polymerase sigma-E factor, ev=1e-81, 80% identity; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
Dgeo_1520FUN14 domain protein; PFAM: FUN14: (2.2e-18); KEGG: dra:DR0193 hypothetical protein, ev=1e-26, 50% identity. (115 aa)
Dgeo_1554PFAM: NLP/P60: (1.1e-33) Peptidoglycan-binding LysM: (4.3e-20); KEGG: dra:DR1749 endopeptidase-related protein, ev=2e-71, 64% identity. (208 aa)
Dgeo_1555KEGG: dra:DR1750 hypothetical protein, ev=2e-49, 75% identity. (138 aa)
Dgeo_1556uracil-DNA glycosylase; TIGRFAM: phage SPO1 DNA polymerase-related protein: (8.2e-56); PFAM: Uracil-DNA glycosylase superfamily: (6.3e-40); KEGG: dra:DR1751 DNA polymerase-related protein, ev=7e-78, 69% identity. (230 aa)
Dgeo_1781PFAM: Rhomboid-like protein: (2.2e-24); KEGG: dra:DR1992 hypothetical protein, ev=2e-68, 63% identity. (214 aa)
Dgeo_1903PFAM: 5-formyltetrahydrofolate cyclo-ligase: (5.4e-38); KEGG: dra:DR1815 hypothetical protein, ev=6e-57, 65% identity. (184 aa)
tatA-3Sec-independent protein translocase component TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (92 aa)
tatCSec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (256 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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