STRINGSTRING
Dgeo_0439 Dgeo_0439 Dgeo_0440 Dgeo_0440 Dgeo_1791 Dgeo_1791 Dgeo_1792 Dgeo_1792 Dgeo_1793 Dgeo_1793 Dgeo_1961 Dgeo_1961 Dgeo_1962 Dgeo_1962
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_0439Transcriptional regulator, SARP family; PFAM: Tetratricopeptide TPR_4: (0.1); KEGG: dra:DR0724 hypothetical protein, ev=6e-15, 26% identity. (630 aa)
Dgeo_0440KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity. (100 aa)
Dgeo_1791PFAM: VanZ like protein: (1.5e-13); KEGG: dra:DR2023 hypothetical protein, ev=1e-37, 69% identity. (124 aa)
Dgeo_1792PFAM: ATPase associated with various cellular activities, AAA_3: (4.7e-77) ATPase associated with various cellular activities, AAA_5: (8e-13); KEGG: dra:DR0621 moxR protein, ev=1e-138, 81% identity. (317 aa)
Dgeo_1793PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity. (943 aa)
Dgeo_1961Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity. (127 aa)
Dgeo_1962KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity. (166 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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