(7 nodes) Mixed, incl. Sulfur compound catabolic process, and Papain-like cysteine peptidase superfamily network (Deinococcus geothermalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Dgeo_0439	Transcriptional regulator, SARP family; PFAM: Tetratricopeptide TPR_4: (0.1); KEGG: dra:DR0724 hypothetical protein, ev=6e-15, 26% identity. (630 aa)
	Dgeo_0440	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity. (100 aa)
	Dgeo_1791	PFAM: VanZ like protein: (1.5e-13); KEGG: dra:DR2023 hypothetical protein, ev=1e-37, 69% identity. (124 aa)
	Dgeo_1792	PFAM: ATPase associated with various cellular activities, AAA_3: (4.7e-77) ATPase associated with various cellular activities, AAA_5: (8e-13); KEGG: dra:DR0621 moxR protein, ev=1e-138, 81% identity. (317 aa)
	Dgeo_1793	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity. (943 aa)
	Dgeo_1961	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity. (127 aa)
	Dgeo_1962	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity. (166 aa)

Your Current Organism:

Deinococcus geothermalis

NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Dgeo_0439	Dgeo_0440	Transcriptional regulator, SARP family; PFAM: Tetratricopeptide TPR_4: (0.1); KEGG: dra:DR0724 hypothetical protein, ev=6e-15, 26% identity.	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	0.802
Dgeo_0440	Dgeo_0439	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	Transcriptional regulator, SARP family; PFAM: Tetratricopeptide TPR_4: (0.1); KEGG: dra:DR0724 hypothetical protein, ev=6e-15, 26% identity.	0.802
Dgeo_0440	Dgeo_1793	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	0.678
Dgeo_0440	Dgeo_1961	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity.	0.678
Dgeo_0440	Dgeo_1962	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity.	0.678
Dgeo_1791	Dgeo_1792	PFAM: VanZ like protein: (1.5e-13); KEGG: dra:DR2023 hypothetical protein, ev=1e-37, 69% identity.	PFAM: ATPase associated with various cellular activities, AAA_3: (4.7e-77) ATPase associated with various cellular activities, AAA_5: (8e-13); KEGG: dra:DR0621 moxR protein, ev=1e-138, 81% identity.	0.838
Dgeo_1791	Dgeo_1793	PFAM: VanZ like protein: (1.5e-13); KEGG: dra:DR2023 hypothetical protein, ev=1e-37, 69% identity.	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	0.852
Dgeo_1792	Dgeo_1791	PFAM: ATPase associated with various cellular activities, AAA_3: (4.7e-77) ATPase associated with various cellular activities, AAA_5: (8e-13); KEGG: dra:DR0621 moxR protein, ev=1e-138, 81% identity.	PFAM: VanZ like protein: (1.5e-13); KEGG: dra:DR2023 hypothetical protein, ev=1e-37, 69% identity.	0.838
Dgeo_1792	Dgeo_1793	PFAM: ATPase associated with various cellular activities, AAA_3: (4.7e-77) ATPase associated with various cellular activities, AAA_5: (8e-13); KEGG: dra:DR0621 moxR protein, ev=1e-138, 81% identity.	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	0.975
Dgeo_1793	Dgeo_0440	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	0.678
Dgeo_1793	Dgeo_1791	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	PFAM: VanZ like protein: (1.5e-13); KEGG: dra:DR2023 hypothetical protein, ev=1e-37, 69% identity.	0.852
Dgeo_1793	Dgeo_1792	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	PFAM: ATPase associated with various cellular activities, AAA_3: (4.7e-77) ATPase associated with various cellular activities, AAA_5: (8e-13); KEGG: dra:DR0621 moxR protein, ev=1e-138, 81% identity.	0.975
Dgeo_1793	Dgeo_1961	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity.	0.678
Dgeo_1793	Dgeo_1962	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity.	0.678
Dgeo_1961	Dgeo_0440	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity.	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	0.678
Dgeo_1961	Dgeo_1793	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity.	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	0.678
Dgeo_1961	Dgeo_1962	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity.	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity.	0.840
Dgeo_1962	Dgeo_0440	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity.	KEGG: dra:DR2001 hypothetical protein, ev=1e-27, 63% identity.	0.678
Dgeo_1962	Dgeo_1793	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity.	PFAM: protein of unknown function DUF58: (4.3e-22) transglutaminase-like: (9.1e-27); KEGG: dra:DR0620 hypothetical protein, ev=0.0, 56% identity.	0.678
Dgeo_1962	Dgeo_1961	KEGG: dra:DR2003 hypothetical protein, ev=6e-44, 56% identity.	Metal binding protein family Yfit/DinB; KEGG: dra:DR2002 hypothetical protein, ev=8e-23, 48% identity.	0.840

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