STRINGSTRING
Dgeo_1913 Dgeo_1913 Dgeo_0850 Dgeo_0850 proA proA Dgeo_1120 Dgeo_1120 Dgeo_1174 Dgeo_1174
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_1913TIGRFAM: Phenylacetic acid degradation protein paaN: (0); PFAM: aldehyde dehydrogenase: (1.2e-18) MaoC-like dehydratase: (8.9e-32); KEGG: dra:DR2381 aldehyde dehydrogenase, ev=0.0, 82% identity. (695 aa)
Dgeo_0850TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase 2: (0); PFAM: aldehyde dehydrogenase: (2.6e-178); KEGG: dra:DR0813 1-pyrroline-5-carboxylate dehydrogenase, ev=0.0, 83% identity; Belongs to the aldehyde dehydrogenase family. (523 aa)
proAGamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (449 aa)
Dgeo_1120PFAM: aldehyde dehydrogenase: (3.5e-170); KEGG: dra:DRA0343 succinic-semialdehyde dehydrogenase, putative, ev=0.0, 70% identity. (485 aa)
Dgeo_1174PFAM: aldehyde dehydrogenase: (3.9e-187); KEGG: dra:DRA0030 1-pyrroline-5-carboxylate dehydrogenase, ev=0.0, 76% identity; Belongs to the aldehyde dehydrogenase family. (525 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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